Folding free energies of 5'-UTRs impact post-transcriptional regulation on a genomic scale in yeast (Q24815888)

5 July 2017

Folding free energies of 5'-UTRs impact post-transcriptional regulation on a genomic scale in yeast (English)

1 reference

5 July 2017

Markus Ringnér

1

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author name string

Morten Krogh

series ordinal

2

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PubMed ID

16355254

5 July 2017

language of work or name

English

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publication date

9 December 2005

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PLOS Computational Biology

5 July 2017

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5 July 2017

1

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5 July 2017

e72

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5 July 2017

7

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Creative Commons Attribution 4.0 International

5 July 2017

start time

9 December 2005

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5' secondary structure.

7 April 2017

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7 April 2017

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7 April 2017

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Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence

7 April 2017

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7 April 2017

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.0010072

7 January 2021

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Translational regulation of Hsp90 mRNA. AUG-proximal 5'-untranslated region elements essential for preferential heat shock translation

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript

7 April 2017

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Turnover mechanisms of the stable yeast PGK1 mRNA

7 April 2017

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A PUF family portrait: 3'UTR regulation as a way of life

7 April 2017

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Post-transcriptional control of gene expression: a genome-wide perspective.

25 May 2017

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The implications of structured 5' untranslated regions on translation and disease

28 September 2017

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Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors

28 September 2017

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Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast

28 September 2017

1 reference

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Genome-wide regulatory analysis using en masse nuclear run-ons emRUNs and ribonomic profiling with autoimmune sera

28 September 2017

1 reference

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Widespread selection for local RNA secondary structure in coding regions of bacterial genes

28 September 2017

1 reference

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Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

28 September 2017

1 reference

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Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

28 September 2017

1 reference

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Spatial and temporal control of RNA stability

28 September 2017

1 reference

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mRNA localization: message on the move

28 September 2017

1 reference

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Mechanisms and control of mRNA decapping in Saccharomyces cerevisiae

28 September 2017

1 reference

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No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

28 September 2017

1 reference

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Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae

28 September 2017

1 reference

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The role of the 5' untranslated region of an mRNA in translation regulation during development

28 September 2017

1 reference

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mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

Regulation of protein synthesis during heat shock

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

mRNA structures influencing translation in the yeast Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

Insertion mutagenesis to increase secondary structure within the 5' noncoding region of a eukaryotic mRNA reduces translational efficiency.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

The role of the 5' untranslated region (UTR) in glucose-dependent mRNA decay

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An integrated approach for finding overlooked genes in yeast.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1309706

Eukaryotic mRNPs may represent posttranscriptional operons

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16355254

12 December 2020

inferred from PubMed ID database lookup

Variations in yeast 3'-processing cis-elements correlate with transcript stability

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16355254

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inferred from PubMed ID database lookup

Fast folding and comparison of RNA secondary structures

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.0010072

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PCBI.0010072

1 reference

journals/ploscb/RingnerK05

5 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 July 2017

1 reference

PubMed ID

16355254