Prediction of transcriptional terminators in Bacillus subtilis and related species (Q24813507)

4 July 2017

Prediction of transcriptional terminators in Bacillus subtilis and related species (English)

1 reference

4 July 2017

Bacillus subtilis

1 reference

4

Satoru Miyano

1 reference

4 July 2017

Michiel J L de Hoon

1

1 reference

4 July 2017

Yuko Makita

series ordinal

2

1 reference

4 July 2017

Kenta Nakai

series ordinal

3

1 reference

4 July 2017

language of work or name

English

0 references

publication date

12 August 2005

1 reference

PLOS Computational Biology

4 July 2017

1 reference

4 July 2017

1

1 reference

4 July 2017

3

1 reference

4 July 2017

e25

1 reference

Creative Commons Attribution 4.0 International

4 July 2017

start time

12 August 2005

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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7 April 2017

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

7 April 2017

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Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

7 April 2017

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The Minimal Gene Complement of Mycoplasma genitalium

7 April 2017

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Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome

7 April 2017

1 reference

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Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes

28 September 2017

1 reference

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DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics

28 September 2017

1 reference

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Forespore-specific expression of Bacillus subtilis yqfS, which encodes type IV apurinic/apyrimidinic endonuclease, a component of the base excision repair pathway

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

The transcription termination factor Rho is required for oxidative stress survival in Caulobacter crescentus

28 September 2017

1 reference

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rho is not essential for viability or virulence in Staphylococcus aureus

28 September 2017

1 reference

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Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models

28 September 2017

1 reference

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Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Transcription termination factor Rho is essential for Micrococcus luteus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

The Rhodobacter sphaeroides 2.4.1 rho gene: expression and genetic analysis of structure and function

28 September 2017

1 reference

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Phylogenetic analysis of sequences from diverse bacteria with homology to the Escherichia coli rho gene

28 September 2017

1 reference

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Activity of a Streptomyces transcriptional terminator in Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Isolation and characterization of conditional lethal mutants of Escherichia coli defective in transcription termination factor rho

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Expression of the glycolytic gapA operon in Bacillus subtilis: differential syntheses of proteins encoded by the operon.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Prediction of transcription terminators in bacterial genomes.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Bidirectional promoter and terminator regions bracket mmr, a resistance gene embedded in the Streptomyces coelicolor A3(2) gene cluster encoding methylenomycin production

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Parameters affecting transcription termination by Escherichia coli RNA polymerase. I. Analysis of 13 rho-independent terminators

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Computational prediction of operons in Synechococcus sp. WH8102.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Organization and expression of the Bacillus subtilis sigY operon.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

A powerful non-homology method for the prediction of operons in prokaryotes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1187862

Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16110342

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0010025

1 reference

journals/ploscb/HoonMNM05

4 July 2017

1 reference

DBLP Dataset 2021-01-02

OpenCitations bibliographic resource ID

28 January 2021

1702477

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

4 July 2017

1 reference