H++: a server for estimating pKas and adding missing hydrogens to macromolecules (Q24813167)

1

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Jonathan B Myers

2

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Timothy Folta

3

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Valia Shoja

4

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Alexey Onufriev

Exploring protein native states and large-scale conformational changes with a modified generalized born model

6

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language of work or name

English

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publication date

1 July 2005

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published in

Nucleic Acids Research

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volume

33

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page(s)

W368-71

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issue

Web Server issue

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cites work

1 reference

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Classical electrostatics in biology and chemistry

7 April 2017

1 reference

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Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures

7 April 2017

1 reference

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Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160225

Electrostatic aspects of protein-protein interactions.

28 September 2017

1 reference

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Prediction of pH-dependent properties of proteins

28 September 2017

1 reference

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Hydrogen bonding and biological specificity analysed by protein engineering

28 September 2017

1 reference

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pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

28 September 2017

1 reference

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Electrostatic Energy and Macromolecular Function

28 September 2017

1 reference

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Electrostatic effects in proteins

28 September 2017

1 reference

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Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and the photosynthetic reaction center of Rhodobacter sphaeroides

28 September 2017

1 reference

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Electrostatic forces in two lysozymes: calculations and measurements of histidine pKa values

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160225

Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin

30 May 2018

1 reference

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Constant pH molecular dynamics in generalized Born implicit solvent

30 May 2018

1 reference

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Proton Affinity Changes Driving Unidirectional Proton Transport in the Bacteriorhodopsin Photocycle

28 November 2018

1 reference

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Optimizing the hydrogen-bond network in Poisson-Boltzmann equation-based pK(a) calculations.

28 November 2018

1 reference

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Electrostatic models for computing protonation and redox equilibria in proteins.

28 November 2018

1 reference

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Use of 1H NMR spectroscopy and computer simulations To analyze histidine pKa changes in a protein tyrosine phosphatase: experimental and theoretical determination of electrostatic properties in a small protein.

28 November 2018

1 reference

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Intrinsic pKas of ionizable residues in proteins: an explicit solvent calculation for lysozyme

28 November 2018

1 reference

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Calculations of enzymatic reactions: calculations of pKa, proton transfer reactions, and general acid catalysis reactions in enzymes.

28 November 2018

1 reference

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pH dependence of stability of staphylococcal nuclease: evidence of substantial electrostatic interactions in the denatured state

28 November 2018

1 reference

12 December 2020

Interpretation of protein titration curves. Application to lysozyme

1 reference

12 December 2020

On the calculation of pKas in proteins

1 reference

12 December 2020

Multiple-site titration and molecular modeling: two rapid methods for computing energies and forces for ionizable groups in proteins

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI464

1 reference

journals/nar/GordonMFSHO05

2942782

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

2942782

1 reference

1 reference

1 reference