TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins (Q24812146)

3 July 2017

TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins (English)

1 reference

3 July 2017

1 reference

Makiko Suwa

3

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Shandar Ahmad

object named as

Shandar Ahmad

series ordinal

2

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M Michael Gromiha

series ordinal

1

object named as

M Michael Gromiha

1 reference

PubMed ID

15980447

3 July 2017

language of work or name

English

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publication date

1 July 2005

1 reference

3 July 2017

Nucleic Acids Research

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3 July 2017

33

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3 July 2017

Web Server issue

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3 July 2017

W164-7

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Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

3 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

7 April 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

The transporter classification (TC) system, 2002

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Predicting transmembrane beta-barrels in proteomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Identification of beta-barrel membrane proteins based on amino acid composition properties and predicted secondary structure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Toward genomic identification of beta-barrel membrane proteins: composition and architecture of known structures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Prediction of transmembrane beta-strands from hydrophobic characteristics of proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Conservation and prediction of solvent accessibility in protein families

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Models for the structure of outer-membrane proteins of Escherichia coli derived from raman spectroscopy and prediction methods

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Folding patterns of porin and bacteriorhodopsin.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Identification of membrane spanning beta strands in bacterial porins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Prediction of the general structure of OmpF and PhoE from the sequence and structure of porin from Rhodobacter capsulatus. Orientation of porin in the membrane

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

A simple statistical method for discriminating outer membrane proteins with better accuracy.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Real value prediction of solvent accessibility from amino acid sequence.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Prediction of protein surface accessibility with information theory.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

Profiles from structure based sequence alignment of porins can identify beta stranded integral membrane proteins.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

How good is prediction of protein structural class by the component-coupled method?

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160128

28 November 2018

Identifiers

DOI

10.1093/NAR/GKI367

1 reference

3 July 2017

journals/nar/GromihaAS05

1 reference

DBLP Dataset 2021-01-02

28 January 2021

0 references

1 reference

PubMed ID

15980447