A new computational method for the detection of horizontal gene transfer events (Q24807301)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

title

A new computational method for the detection of horizontal gene transfer events (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

main subject

horizontal gene transfer

0 references

author

Aristotelis Tsirigos

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Isidore Rigoutsos

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

author name string

Aristotelis Tsirigos

1

0 references

Isidore Rigoutsos

2

0 references

language of work or name

English

0 references

publication date

16 February 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

published in

Nucleic Acids Research

1 reference

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8 January 2020

volume

33

1 reference

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8 January 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

page(s)

922-933

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process

8 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Horizontal gene transfer among genomes: the complexity hypothesis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Molecular archaeology of the Escherichia coli genome

7 April 2017

1 reference

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Studies on the chemical nature of the substance inducing transformation of pneumococcal types. Inductions of transformation by a desoxyribonucleic acid fraction isolated from pneumococcus type III

7 April 2017

1 reference

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Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Lateral gene transfer and the nature of bacterial innovation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Mitochondrial Genome Evolution and the Origin of Eukaryotes

7 April 2017

1 reference

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Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

7 April 2017

1 reference

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Phylogenetic classification and the universal tree

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Horizontal gene transfer in prokaryotes: quantification and classification

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Codon usage and tRNA content in unicellular and multicellular organisms

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Biased biological functions of horizontally transferred genes in prokaryotic genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Detection of genes with atypical nucleotide sequence in microbial genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

On surrogate methods for detecting lateral gene transfer

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Evolution of organellar genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Shaping the genome--restriction-modification systems as mobile genetic elements.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Compositional biases of bacterial genomes and evolutionary implications

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

What drives codon choices in human genes?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Horizontal gene transfer: evidence and possible consequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Selfish behavior of restriction-modification systems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Dinucleotide relative abundance extremes: a genomic signature

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Cross-species gene transfer; implications for a new theory of evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Evidence for horizontal gene transfer in Escherichia coli speciation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Evolution by acquisition: the case for horizontal gene transfers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Horizontal transfer of a phosphatase gene as evidence for mosaic structure of the Salmonella genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Archaeal genomics: do archaea have a mixed heritage?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Genetic analysis of a high-level vancomycin-resistant isolate of Staphylococcus aureus

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Evolutionary anomalies among the aminoacyl-tRNA synthetases

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

How to interpret an anonymous bacterial genome: machine learning approach to gene identification.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Codon usages in different gene classes of the Escherichia coli genome.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549390

Gene Transfer from Organelles to the Nucleus: How Much, What Happens, and Why?

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15716310

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15716310

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15716310

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI187

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15716310%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

2 references