Analysis of scanning force microscopy images of protein-induced DNA bending using simulations (Q24805746)

1

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Joost van Mameren

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Martijn S Luijsterburg

3

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Monika E Mysiak

4

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Ana Janićijević

5

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Grzegorz Pazdzior

6

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Peter C van der Vliet

7

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Claire Wyman

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Gijs J L Wuite

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

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language of work or name

English

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publication date

2005

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published in

Nucleic Acids Research

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volume

33

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issue

7

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page(s)

e68

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cites work

1 reference

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Flexible DNA bending in HU-DNA cocrystal structures

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The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition

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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

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NFI and Oct-1 bend the Ad5 origin in the same direction leading to optimal DNA replication

7 April 2017

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Integration host factor is involved in transcriptional regulation of the Brucella abortus virB operon.

28 September 2017

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Dual architectural roles of HU: formation of flexible hinges and rigid filaments

28 September 2017

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Bending of adenovirus origin DNA by nuclear factor I as shown by scanning force microscopy is required for optimal DNA replication

28 September 2017

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Insights into the regulation of transcription by scanning force microscopy.

28 September 2017

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Analysis of the intrinsic bend in the M13 origin of replication by atomic force microscopy

28 September 2017

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HU binding to bent DNA: a fluorescence resonance energy transfer and anisotropy study

28 September 2017

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Compaction of single DNA molecules induced by binding of integration host factor (IHF).

28 September 2017

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Structural basis for preferential binding of H-NS to curved DNA.

28 September 2017

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Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer

28 September 2017

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Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

28 September 2017

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Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope

28 September 2017

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Bending of DNA by transcription factors

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Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

28 September 2017

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POU proteins bend DNA via the POU-specific domain

28 September 2017

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DNA curving and bending in protein-DNA recognition

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Wrapping of DNA around the E.coli RNA polymerase open promoter complex

28 September 2017

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30 May 2018

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Accurate length determination of DNA molecules visualized by atomic force microscopy: evidence for a partial B- to A-form transition on mica.

30 May 2018

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Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility

28 November 2018

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DNA bending by Cro protein in specific and nonspecific complexes: implications for protein site recognition and specificity

28 November 2018

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Structural and Kinetic Studies of a Cisplatin-modified DNA Icosamer Binding to HMG1 Domain B

28 November 2018

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12 December 2020

DNA bending induced by high mobility group proteins studied by fluorescence resonance energy transfer

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12 December 2020

Structural distortions induced by integration host factor (IHF) at the H' site of phage lambda probed by (+)-CC-1065, pluramycin, and KMnO4 and by DNA cyclization studies

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12 December 2020

Radial Distribution Function of Semiflexible Polymers

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12 December 2020

DNA bending by the human damage recognition complex XPC-HR23B

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12 December 2020

Direct atomic force microscopy visualization of integration host factor-induced DNA bending structure of the promoter regulatory region on the Pseudomonas TOL plasmid

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12 December 2020