NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A (Q24802274)

1

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Akihiro Oguro

2

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Gota Kawai

3

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Takashi Ohtsu

4

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Yoshikazu Nakamura

Geometric nomenclature and classification of RNA base pairs

5

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language of work or name

English

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publication date

2005

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published in

Nucleic Acids Research

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volume

33

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issue

2

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page(s)

745-54

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548364

Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548364

Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548364

Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548364

A novel family of RNA tetraloop structure forms the recognition site for Saccharomyces cerevisiae RNase III.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548364

A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548364

Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=548364

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

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1 reference

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7 April 2017

1 reference

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RNA motifs that determine specificity between a viral replicase and its promoter

7 April 2017

1 reference

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Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae--the prototype of the DEAD box protein family

7 April 2017

1 reference

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1 reference

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1 reference

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1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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7 April 2017

1 reference

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1 reference

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Yeast RNA helicases of the DEAD-box family involved in translation initiation

28 September 2017

1 reference

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28 September 2017

1 reference

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28 September 2017

1 reference

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1 reference

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Decreased proliferation of human melanoma cell lines caused by antisense RNA against translation factor eIF-4A1.

28 September 2017

1 reference

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28 September 2017

1 reference

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Overexpression of eukaryotic protein synthesis initiation factor 4E in HeLa cells results in aberrant growth and morphology

28 September 2017

1 reference

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28 September 2017

1 reference

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28 September 2017

1 reference

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30 May 2018

1 reference

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30 May 2018

1 reference

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RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis

28 November 2018

1 reference

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1 reference

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