Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome (Q24796018)

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23 November 2019

review article

3 references

19 November 2020

30 April 2021

Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14966531%20AND%20SRC:MED&resulttype=core&format=json

biomedical investigative technique

23 November 2019

main subject

1 reference

19 September 2019

1 reference

DNA mutational analysis

1 reference

19 November 2020

1 reference

30 April 2021

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14966531%20AND%20SRC:MED&resulttype=core&format=json

23 November 2019

author name string

Hao Li

series ordinal

2

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23 November 2019

language of work or name

English

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publication date

17 February 2004

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23 November 2019

1 February 2004

2 references

19 November 2020

30 April 2021

4 references

19 September 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14966531%20AND%20SRC:MED&resulttype=core&format=json

23 November 2019

19 November 2020

30 April 2021

2

1 reference

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23 November 2019

page(s)

E29

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23 November 2019

issue

2

1 reference

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Creative Commons Attribution 4.0 International

23 November 2019

copyright license

3 references

19 September 2019

19 November 2020

Genomic analysis of orthologous mouse and human olfactory receptor loci

30 April 2021

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Initial sequencing and analysis of the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Comparative DNA sequence analysis of mouse and human protocadherin gene clusters

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Gene ontology: tool for the unification of biology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Distribution of olfactory receptor genes in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Mutation rates differ among regions of the mammalian genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Initial sequencing and comparative analysis of the mouse genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Basic local alignment search tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

PAML: a program package for phylogenetic analysis by maximum likelihood

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Isochores and the evolutionary genomics of vertebrates

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Chromosomal location effects on gene sequence evolution in mammals

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

A codon-based model of nucleotide substitution for protein-coding DNA sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Mutation rates in mammalian genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Evidence for co-evolution of gene order and recombination rate

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Human SNP variability and mutation rate are higher in regions of high recombination

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Somatic hypermutation of immunoglobulin genes: merging mechanisms for genetic diversity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Genes on human chromosome 19 show extreme divergence from the mouse orthologs and a high GC content

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

A compendium of gene expression in normal human tissues

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

The causes of synonymous rate variation in the rodent genome. Can substitution rates be used to estimate the sex bias in mutation rate?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Variation in synonymous substitution rates among mammalian genes and the correlation between synonymous and nonsynonymous divergences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

DNA sequence evolution: the sounds of silence

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

HOVERGEN: a database of homologous vertebrate genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Strand asymmetries in DNA evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Selection at the wobble position of codons read by the same tRNA in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

The cadherin superfamily at the synapse: more members, more missions.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.0020029

Mammalian housekeeping genes evolve more slowly than tissue-specific genes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

A test of translational selection at 'silent' sites in the human genome: base composition comparisons in alternatively spliced genes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Evolutionary rate of a gene affected by chromosomal position.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

A model for the correlation of mutation rate with GC content and the origin of GC-rich isochores.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340940

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

28 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.0020029

Clustering of Tissue-Specific Genes Underlies Much of the Similarity in Rates of Protein Evolution of Linked Genes

21 January 2018

1 reference

12 December 2020

Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions

1 reference

12 December 2020

Mutation pattern variation among regions of the primate genome

1 reference

12 December 2020

Promoter choice determines splice site selection in protocadherin alpha and gamma pre-mRNA splicing

1 reference

12 December 2020

10.1371/JOURNAL.PBIO.0020029

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DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14966531%20AND%20SRC:MED&resulttype=core&format=json

23 November 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14966531%20AND%20SRC:MED&resulttype=core&format=json

23 November 2019

2 references