HOPPSIGEN: a database of human and mouse processed pseudogenes (Q24795786)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608268%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

title

HOPPSIGEN: a database of human and mouse processed pseudogenes (English)

1 reference

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6 January 2020

0 references

2

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6 January 2020

author name string

Adel Khelifi

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608268%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Dominique Mouchiroud

series ordinal

3

1 reference

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6 January 2020

language of work or name

English

0 references

publication date

1 January 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608268%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

published in

Nucleic Acids Research

1 reference

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6 January 2020

volume

33

1 reference

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6 January 2020

page(s)

D59-66

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6 January 2020

issue

Database issue

1 reference

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A genome-wide survey of human pseudogenes

6 January 2020

cites work

1 reference

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Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates

7 April 2017

1 reference

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Human-mouse alignments with BLASTZ

7 April 2017

1 reference

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Length distribution of long interspersed nucleotide elements (LINEs) and processed pseudogenes of human endogenous retroviruses: implications for retrotransposition and pseudogene detection

7 April 2017

1 reference

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Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

Initial sequencing and analysis of the human genome

7 April 2017

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Characterization and repeat analysis of the compact genome of the freshwater pufferfish Tetraodon nigroviridis

7 April 2017

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Isochores result from mutation not selection

7 April 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 April 2017

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

7 April 2017

1 reference

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Initial sequencing and comparative analysis of the mouse genome

7 April 2017

1 reference

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The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

7 April 2017

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

7 April 2017

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Human LINE retrotransposons generate processed pseudogenes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

7 April 2017

Vertebrate pseudogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

Processed pseudogenes: characteristics and evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

Comparative analysis of processed pseudogenes in the mouse and human genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

Integrated databanks access and sequence/structure analysis services at the PBIL.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

Analysis of expressed sequence tags indicates 35,000 human genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

Nature and structure of human genes that generate retropseudogenes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

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28 September 2017

1 reference

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HOVERGEN: a database of homologous vertebrate genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540038

The EMBL Nucleotide Sequence Database.

28 September 2017

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Complicity of gene and pseudogene

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15608268

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI084

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608268%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

DBLP publication ID

journals/nar/KhelifiDM05

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608268%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

1 reference