Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements (Q24794344)

1

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Toshiyuki Chatake

2

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Takashi Ohhara

3

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Kazuo Kurihara

4

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Ichiro Tanaka

5

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Nobuhiro Suzuki

6

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Zui Fujimoto

7

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Hiroshi Mizuno

8

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Nobuo Niimura

Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 A resolution

9

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language of work or name

English

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publication date

2005

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published in

Nucleic Acids Research

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volume

33

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issue

9

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page(s)

3017-24

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Conformational flexibility of B-DNA at 0.74 A resolution: d(CCAGTACTGG)(2)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

The B-DNA dodecamer at high resolution reveals a spine of water on sodium

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Neutron Laue diffractometry with an imaging plate provides an effective data collection regime for neutron protein crystallography

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Hydrogen and hydration in proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

A glossary of DNA structures from A to Z

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Water and ion binding around RNA and DNA (C,G) oligomers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Crystal structure analysis of a complete turn of B-DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Double helical DNA: conformations, physical properties, and interactions with ligands

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Molecular structure of the B-DNA dodecamer d(CGCAAATTTGCG)2. An examination of propeller twist and minor-groove water structure at 2.2 A resolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

More rapid evaluation of biomacromolecular crystals for diffraction experiments.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140084

Three-centre C-H---O hydrogen bonds in the DNA minor groove: analysis of oligonucleotide crystal structures

28 November 2018

1 reference

12 December 2020

Crystallization of a large single crystal of a B-DNA decamer for a neutron diffraction experiment by the phase-diagram technique

1 reference

12 December 2020

Hydration in proteins observed by high-resolution neutron crystallography

1 reference

12 December 2020

Crystallization of a large single crystal of cubic insulin for neutron protein crystallography

1 reference

12 December 2020

A new neutron single-crystal diffractometer dedicated for biological macromolecules (BIX-4)

1 reference

12 December 2020

Hydration structures in proteins and neutron diffraction experiment on dissimilatory sul te reductase D (DsrD)

1 reference

12 December 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

12 December 2020

Dynamic behaviors of DNA molecules in solution studied by fluorescence microscopy

1 reference

12 December 2020

Computer simulation of DNA double-helix dynamics

1 reference

12 December 2020

Structure of a B-DNA dodecamer. III. Geometry of hydration

1 reference

12 December 2020

Hydration of C-H groups in tRNA

1 reference

12 December 2020

A high-angle neutron fibre diffraction study of the hydration of deuterated A-DNA

1 reference

12 December 2020