Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies (Q24675376)

3

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Carlos Bustamante

object named as

C Bustamante

6

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author name string

D Collin

1

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F Ritort

2

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S B Smith

4

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I Tinoco

Mfold web server for nucleic acid folding and hybridization prediction

5

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language of work or name

English

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publication date

8 September 2005

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published in

Nature

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volume

437

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page(s)

231-4

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issue

7056

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1752236

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

7 April 2017

1 reference

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Probability of second law violations in shearing steady states

7 April 2017

1 reference

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Experimental Demonstration of Violations of the Second Law of Thermodynamics for Small Systems and Short Time Scales

7 April 2017

1 reference

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The thermodynamics of DNA structural motifs

7 April 2017

1 reference

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Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences

7 April 2017

1 reference

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Nonequilibrium Equality for Free Energy Differences

22 April 2017

1 reference

https://api.crossref.org/works/10.1038/NATURE04061

Thermodynamic and kinetic aspects of RNA pulling experiments

22 April 2017

1 reference

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Calculating potentials of mean force from steered molecular dynamics simulations

28 September 2017

1 reference

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Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements

28 September 2017

1 reference

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A two-state kinetic model for the unfolding of single molecules by mechanical force

28 September 2017

1 reference

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Gene silencing using micro-RNA designed hairpins

28 September 2017

1 reference

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Free energy reconstruction from nonequilibrium single-molecule pulling experiments

28 September 2017

1 reference

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Role of conserved nucleotides in building the 16 S rRNA binding site for ribosomal protein S15.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1752236

Metal-binding sites in the major groove of a large ribozyme domain

28 September 2017

1 reference

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Self-cleaving catalytic RNA.

28 September 2017

1 reference

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Structure of yeast phenylalanine tRNA at 3 Å resolution

28 September 2017

1 reference

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Optical-trap force transducer that operates by direct measurement of light momentum

28 September 2017

1 reference

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Theory of a systematic computational error in free energy differences.

28 November 2018

1 reference

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Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality

28 November 2018

1 reference

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Reversible unfolding of single RNA molecules by mechanical force

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1752236

Equilibrium Free Energies from Nonequilibrium Measurements Using Maximum-Likelihood Methods

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16148928

12 December 2020

inferred from PubMed ID database lookup

Dynamical Ensembles in Nonequilibrium Statistical Mechanics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16148928

12 December 2020

inferred from PubMed ID database lookup

The Fluctuation Theorem

1 reference

https://api.crossref.org/works/10.1038%2FNATURE04061

7 January 2021

inferred from DOI database lookup

Fast-growth thermodynamic integration: Error and efficiency analysis

1 reference

https://api.crossref.org/works/10.1038%2FNATURE04061

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE04061

1 reference

Dimensions Publication ID

1 reference

1020571860

0 references

248740

1 reference

1 reference

1 reference