snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome (Q24672901)

1

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Xiao-Chen Zhang

2

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Hui Zhou

4

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Mian-Bo Huang

5

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Shu Zhang

6

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Yue-Qin Chen

7

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Liang-Hu Qu

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs

8

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language of work or name

English

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publication date

2006

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published in

Nucleic Acids Research

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volume

34

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issue

18

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page(s)

5112-23

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cites work

1 reference

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A computational screen for mammalian pseudouridylation guide H/ACA RNAs

7 April 2017

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A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes

7 April 2017

1 reference

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Computer identification of snoRNA genes using a Mammalian Orthologous Intron Database

7 April 2017

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

7 April 2017

1 reference

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Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs

7 April 2017

1 reference

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Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome

7 April 2017

1 reference

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Computational identification of Drosophila microRNA genes

7 April 2017

1 reference

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Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs

7 April 2017

1 reference

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Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization

7 April 2017

1 reference

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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

7 April 2017

1 reference

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Prediction of complete gene structures in human genomic DNA

7 April 2017

1 reference

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Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs

7 April 2017

1 reference

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Vienna RNA secondary structure server

7 April 2017

1 reference

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The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C

7 April 2017

1 reference

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Phylogenetic shadowing and computational identification of human microRNA genes

7 April 2017

1 reference

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Human box H/ACA pseudouridylation guide RNA machinery

7 April 2017

1 reference

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The expanding snoRNA world

7 April 2017

1 reference

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CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana

7 April 2017

1 reference

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Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions

7 April 2017

1 reference

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RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse

7 April 2017

1 reference

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A computational screen for methylation guide snoRNAs in yeast

7 April 2017

1 reference

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Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs

7 April 2017

1 reference

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Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts

7 April 2017

1 reference

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Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides

7 April 2017

1 reference

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The numerous modified nucleotides in eukaryotic ribosomal RNA

7 April 2017

1 reference

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The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions

7 April 2017

1 reference

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ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs

7 April 2017

1 reference

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Ultraconserved elements in insect genomes: a highly conserved intronic sequence implicated in the control of homothorax mRNA splicing

28 September 2017

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Experimental RNomics: a global approach to identifying small nuclear RNAs and their targets in different model organisms

28 September 2017

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28 September 2017

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The Schizosaccharomyces pombe mgU6-47 gene is required for 2'-O-methylation of U6 snRNA at A41.

28 September 2017

1 reference

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Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp

28 September 2017

1 reference

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A functional role for some Fugu introns larger than the typical short ones: the example of the gene coding for ribosomal protein S7 and snoRNA U17.

28 September 2017

1 reference

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U17XS8, a small nucleolar RNA with a 12 nt complementarity to 18S rRNA and coded by a sequence repeated in the six introns of Xenopus laevis ribosomal protein S8 gene.

28 September 2017

1 reference

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Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

28 September 2017

1 reference

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A search for H/ACA snoRNAs in yeast using MFE secondary structure prediction.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636440

A tutorial on hidden Markov models and selected applications in speech recognition

28 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKL672

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL672

1 reference

1684175

1684175

1 reference

1 reference

1 reference