Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins (Q24655285)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

Chromatin-modulating protein MRC1 YCL061C

10 January 2020

main subject

1 reference

GOA release 2020-03-11

Tof1p YNL273W

1 reference

GOA release 2020-03-11

author

Irina Voineagu

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Sergei Mirkin

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

2

Vidhya Narayanan

1 reference

10 January 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

Kirill S Lobachev

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

language of work or name

English

0 references

publication date

15 July 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

10 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

volume

105

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

issue

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

page(s)

9936-9941

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

10 January 2020

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2481305/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Characteristic enrichment of DNA repeats in different genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Mrc1 and Tof1 regulate DNA replication forks in different ways during normal S phase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Mrc1 and Tof1 promote replication fork progression and recovery independently of Rad53.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Selective extraction of polyoma DNA from infected mouse cell cultures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

The localization of replication origins on ARS plasmids in S. cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

An AT-rich sequence in human common fragile site FRA16D causes fork stalling and chromosome breakage in S. cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

The ATR pathway: fine-tuning the fork

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Non-B DNA conformations, mutagenesis and disease

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Hairpin- and cruciform-mediated chromosome breakage: causes and consequences in eukaryotic cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Replication fork barriers: pausing for a break or stalling for time?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

The Rad53 signal transduction pathway: Replication fork stabilization, DNA repair, and adaptation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Palindrome-mediated chromosomal translocations in humans

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

DNA structures, repeat expansions and human hereditary disorders.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Non-B DNA structure-induced genetic instability

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

A mechanism of palindromic gene amplification in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Both CAG repeats and inverted DNA repeats stimulate spontaneous unequal sister-chromatid exchange in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

A 160-bp palindrome is a Rad50.Rad32-dependent mitotic recombination hotspot in Schizosaccharomyces pombe

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Inverted Alu repeats unstable in yeast are excluded from the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Long palindromic sequences induce double-strand breaks during meiosis in yeast.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Transcription through a simple DNA repeat blocks replication elongation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Factors affecting inverted repeat stimulation of recombination and deletion in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Long DNA palindromes, cruciform structures, genetic instability and secondary structure repair

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Pausing of DNA synthesis in vitro at specific loci in CTG and CGG triplet repeats from human hereditary disease genes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Rapid DNA preparation for 2D gel analysis of replication intermediates

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Template-directed pausing in in vitro DNA synthesis by DNA polymerase a from Drosophila melanogaster embryos

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

The inverted repeat as a recognizable structural feature in supercoiled DNA molecules

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Replication of Eukaryotic Chromosomes: A Close-up of the Replication Fork

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Binding and unwinding--how T antigen engages the SV40 origin of DNA replication

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

On the deletion of inverted repeated DNA in Escherichia coli: effects of length, thermal stability, and cruciform formation in vivo

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

The effect of template secondary structure on vaccinia DNA polymerase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Studies on the mechanism of enzymatic DNA elongation by Escherichia coli DNA polymerase II.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

DNA replication origin plasticity and perturbed fork progression in human inverted repeats

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

A 140-bp-long palindromic sequence induces double-strand breaks during meiosis in the yeast Saccharomyces cerevisiae.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Specific sequences in native DNA that arrest synthesis by DNA polymerase alpha

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Slow replication of palindrome-containing DNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites.

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0804510105

Long inverted repeats in eukaryotic genomes: recombinogenic motifs determine genomic plasticity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0804510105

The relaxation time for a cruciform structure in superhelical DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0804510105

SbcCD causes a double-strand break at a DNA palindrome in the Escherichia coli chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0804510105

Functional uncoupling of twin polymerases: mechanism of polymerase dissociation from a lagging-strand block.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0804510105

Analysis of triplet repeat replication by two-dimensional gel electrophoresis.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2481305

The Mre11 complex is required for repair of hairpin-capped double-strand breaks and prevention of chromosome rearrangements

28 November 2018

1 reference

12 December 2020

Unexpectedly high rate of de novo constitutional t(11;22) translocations in sperm from normal males

1 reference

12 December 2020

Long AT-rich palindromes and the constitutional t(11;22) breakpoint

1 reference

12 December 2020

The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks

1 reference

12 December 2020

Cruciform structures in supercoiled DNA

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0804510105

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

ADS bibcode

2008PNAS..105.9936V

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18632578%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

2 references