The deep archaeal roots of eukaryotes (Q24642710)

5

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Natalya Yutin

1

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Yuri Wolf

4

object named as

Yuri I Wolf

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Kira Makarova

2

object named as

Kira S Makarova

0 references

Sergey L Mekhedov

Molecular Biology and Evolution

3

object named as

Sergey L Mekhedov

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language of work or name

English

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publication date

August 2008

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published in

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volume

25

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issue

8

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page(s)

1619-30

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cites work

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The Biological Big Bang model for the major transitions in evolution

7 April 2017

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Pattern pluralism and the Tree of Life hypothesis

7 April 2017

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Genome trees from conservation profiles

7 April 2017

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Heterotachy and long-branch attraction in phylogenetics

7 April 2017

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Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell

7 April 2017

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Do orthologous gene phylogenies really support tree-thinking?

7 April 2017

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7 April 2017

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A genomic timescale for the origin of eukaryotes

7 April 2017

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The origin and early evolution of mitochondria

7 April 2017

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The chimeric eukaryote: origin of the nucleus from the karyomastigont in amitochondriate protists

7 April 2017

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7 April 2017

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Archaeal-eubacterial mergers in the origin of Eukarya: phylogenetic classification of life

7 April 2017

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7 April 2017

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Toward Automatic Reconstruction of a Highly Resolved Tree of Life

7 April 2017

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The ring of life provides evidence for a genome fusion origin of eukaryotes

7 April 2017

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

7 April 2017

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A genomic perspective on protein families

7 April 2017

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The COG database: a tool for genome-scale analysis of protein functions and evolution

7 April 2017

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Supertrees disentangle the chimerical origin of eukaryotic genomes

7 April 2017

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Evaluating hypotheses for the origin of eukaryotes

7 April 2017

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Increased taxon sampling greatly reduces phylogenetic error

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Bushes in the tree of life

7 April 2017

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The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga–Flavobacterium–Bacteroides division

7 April 2017

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An approximately unbiased test of phylogenetic tree selection

7 April 2017

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Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Eukaryotic evolution, changes and challenges

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Introns and the origin of nucleus-cytosol compartmentalization

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Prokaryotic evolution in light of gene transfer

7 April 2017

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The hydrogen hypothesis for the first eukaryote

7 April 2017

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The prokaryotic tree of life: past, present... and future?

7 April 2017

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Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

27 September 2017

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Eukaryote evolution: engulfed by speculation

27 September 2017

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Multiple secondary origins of the anaerobic lifestyle in eukaryotes

27 September 2017

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Genomics and the irreducible nature of eukaryote cells

27 September 2017

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Selective forces for the origin of the eukaryotic nucleus

27 September 2017

1 reference

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Genome trees and the nature of genome evolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

27 September 2017

Degenerate mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Increased taxon sampling is advantageous for phylogenetic inference

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Genome trees and the tree of life

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Did DNA replication evolve twice independently?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

A chimeric prokaryotic ancestry of mitochondria and primitive eukaryotes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Metabolic symbiosis at the origin of eukaryotes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Optimally recovering rate variation information from genomes and sequences: pattern filtering

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Genomic evidence for two functionally distinct gene classes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Cytoskeleton in the archaebacterium Thermoplasma acidophilum? Viscosity increase in soluble extracts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Was the nucleus the first endosymbiont?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Evidence that eukaryotes and eocyte prokaryotes are immediate relatives

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

The endosymbiont hypothesis revisited

27 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

27 September 2017

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN108

inferred from DOI database lookup

7 January 2021

based on heuristic

Phylogenetic affinities between eukaryotic cells and a thermophilic mycoplasma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

A tree of life based on protein domain organizations.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

The origin of eukaryotes is suggested as the symbiosis of pyrococcus into gamma-proteobacteria by phylogenetic tree based on gene content

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Testing hypotheses without considering predictions

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN108

Cell symbiosis [correction of symbioisis] theory: status and implications for the fossil record.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN108

Mathematical elegance with biochemical realism: the covarion model of molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN108

Ancestral lipid biosynthesis and early membrane evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN108

A new aspect to the origin and evolution of eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN108

Ribosomal protein-sequence block structure suggests complex prokaryotic evolution with implications for the origin of eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSN108

The archaeal origins of the eukaryotic translational system

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Inferring confidence sets of possibly misspecified gene trees.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464739

Animal evolution and the molecular signature of radiations compressed in time

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18463089

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSN108

1 reference

1799423

1799423

1 reference

1 reference

1 reference