Protospacer recognition motifs: mixed identities and functional diversity (Q24632944)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23403393%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

title

Protospacer recognition motifs: mixed identities and functional diversity (English)

1 reference

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23 February 2020

0 references

1

1 reference

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23 February 2020

Susanne Erdmann

series ordinal

2

1 reference

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Francisco Juan Martínez Mojica

23 February 2020

series ordinal

3

1 reference

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23 February 2020

author name string

Roger A Garrett

series ordinal

4

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23 February 2020

language of work or name

English

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publication date

12 February 2013

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23 February 2020

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23 February 2020

volume

10

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23 February 2020

issue

5

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23 February 2020

page(s)

891-899

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CRISPR-based adaptive immune systems

23 February 2020

cites work

1 reference

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Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies

7 April 2017

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Evolutionary conservation of sequence and secondary structures in CRISPR repeats

7 April 2017

1 reference

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Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.

7 April 2017

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A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

7 April 2017

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

7 April 2017

1 reference

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Mechanism of Foreign DNA Selection in a Bacterial Adaptive Immune System

7 April 2017

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Structure and Mechanism of the CMR Complex for CRISPR-Mediated Antiviral Immunity

7 April 2017

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Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)

7 April 2017

1 reference

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A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair

7 April 2017

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Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense

7 April 2017

1 reference

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A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats

7 April 2017

1 reference

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In vivo protein interactions and complex formation in the Pectobacterium atrosepticum subtype I-F CRISPR/Cas System

7 April 2017

1 reference

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The CRISPR associated protein Cas4 Is a 5' to 3' DNA exonuclease with an iron-sulfur cluster

7 April 2017

1 reference

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The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

7 April 2017

1 reference

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Small CRISPR RNAs guide antiviral defense in prokaryotes

7 April 2017

1 reference

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RNA-guided genetic silencing systems in bacteria and archaea

7 April 2017

1 reference

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Evolution and classification of the CRISPR-Cas systems

7 April 2017

1 reference

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CRISPR/Cas, the immune system of bacteria and archaea

7 April 2017

1 reference

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RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

7 April 2017

1 reference

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CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

7 April 2017

1 reference

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Phage response to CRISPR-encoded resistance in Streptococcus thermophilus

7 April 2017

1 reference

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Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin

7 April 2017

1 reference

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Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements

7 April 2017

1 reference

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CRISPR-spacer integration reporter plasmids reveal distinct genuine acquisition specificities among CRISPR-Cas I-E variants of Escherichia coli

7 April 2017

1 reference

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A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus.

27 September 2017

1 reference

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Target motifs affecting natural immunity by a constitutive CRISPR-Cas system in Escherichia coli.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes

27 September 2017

1 reference

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The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity

27 September 2017

1 reference

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Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein

27 September 2017

1 reference

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Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms.

27 September 2017

1 reference

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Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system

27 September 2017

1 reference

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Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli

27 September 2017

1 reference

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An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA.

27 September 2017

1 reference

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CRISPR interference directs strand specific spacer acquisition

27 September 2017

1 reference

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Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli

27 September 2017

1 reference

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Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Archaeal CRISPR-based immune systems: exchangeable functional modules

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Diversity of CRISPR loci in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Self versus non-self discrimination during CRISPR RNA-directed immunity.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Analysis of CRISPR in Streptococcus mutans suggests frequent occurrence of acquired immunity against infection by M102-like bacteriophages

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Short motif sequences determine the targets of the prokaryotic CRISPR defence system

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

A putative viral defence mechanism in archaeal cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Comparison of plasmid DNA topology among mesophilic and thermophilic eubacteria and archaebacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Reconstructing viral genomes from the environment using fosmid clones: the case of haloviruses

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

Transcription, processing and function of CRISPR cassettes in Escherichia coli

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3737346

The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome.

30 May 2018

1 reference

Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles

21 January 2018

1 reference

The rise and fall of CRISPRs--dynamics of spacer acquisition and loss.

21 January 2018

1 reference

CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems.

21 January 2018

1 reference

Virology: independent virus development outside a host

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.4161/RNA.23764

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23403393%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23403393%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

2 references

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