lncRNAdb: a reference database for long noncoding RNAs (Q24612233)

1

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Marcel E. Dinger

object named as

Marcel E Dinger

4

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John S. Mattick

object named as

John S Mattick

5

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author name string

Dennis K Gascoigne

Creative Commons Attribution-NonCommercial 2.5 Generic

3

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language of work or name

English

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publication date

January 2011

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published in

Nucleic Acids Research

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volume

39

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page(s)

D146-51

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issue

Database issue

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copyright license

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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The steroid receptor RNA activator protein is recruited to promoter regions and acts as a transcriptional repressor

7 April 2017

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

7 April 2017

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Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

7 April 2017

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Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor

7 April 2017

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The genetic signatures of noncoding RNAs

7 April 2017

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tRNADB-CE: tRNA gene database curated manually by experts

7 April 2017

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Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase

7 April 2017

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Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

7 April 2017

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Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

7 April 2017

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Specific expression of long noncoding RNAs in the mouse brain

7 April 2017

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miRBase: tools for microRNA genomics

7 April 2017

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The H19 non-coding RNA is essential for human tumor growth

7 April 2017

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

7 April 2017

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Sno/scaRNAbase: a curated database for small nucleolar RNAs and cajal body-specific RNAs

7 April 2017

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Experimental approaches to identify non-coding RNAs

7 April 2017

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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

7 April 2017

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Genomic analysis of mouse retinal development

7 April 2017

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A gene atlas of the mouse and human protein-encoding transcriptomes

7 April 2017

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Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding

7 April 2017

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Genome-wide atlas of gene expression in the adult mouse brain

7 April 2017

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The transcriptional landscape of the mammalian genome

7 April 2017

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Maternally expressed gene 3, an imprinted noncoding RNA gene, is associated with meningioma pathogenesis and progression

7 April 2017

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Long non-coding RNAs: insights into functions

7 April 2017

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The H19 locus acts in vivo as a tumor suppressor

7 April 2017

1 reference

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The Eukaryotic Genome as an RNA Machine

7 April 2017

1 reference

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Target mimicry provides a new mechanism for regulation of microRNA activity

7 April 2017

1 reference

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The non-coding Air RNA is required for silencing autosomal imprinted genes

7 April 2017

1 reference

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A mammalian gene with introns instead of exons generating stable RNA products

7 April 2017

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Antisense transcription in the mammalian transcriptome

7 April 2017

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The UCSC Genome Browser database: update 2010

7 April 2017

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Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

7 April 2017

1 reference

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

7 April 2017

1 reference

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ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs.

7 April 2017

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Research resource: expression profiling reveals unexpected targets and functions of the human steroid receptor RNA activator (SRA) gene

27 September 2017

1 reference

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Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

P53 mRNA controls p53 activity by managing Mdm2 functions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

A susceptibility locus for papillary thyroid carcinoma on chromosome 8q24.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Noncoding RNA in development

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

NRED: a database of long noncoding RNA expression

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

A starvation-induced noncoding RNA modulates expression of Dicer-regulated genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Noncoding RNAs produced by oncogenic human herpesviruses

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Complex I binding by a virally encoded RNA regulates mitochondria-induced cell death

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Bsr, a nuclear-retained RNA with monoallelic expression

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

A role for noncoding transcription in activation of the yeast PHO5 gene

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

A novel non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

RNAdb 2.0--an expanded database of mammalian non-coding RNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Altered expressions of the noncoding hsromega gene enhances poly-Q-induced neurotoxicity in Drosophila

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Identification and characterization of a virus-inducible non-coding RNA in mouse brain

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Potential structural role of non-coding and coding RNAs in the organization of the cytoskeleton at the vegetal cortex of Xenopus oocytes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

The bereft gene, a potential target of the neural selector gene cut, contributes to bristle morphogenesis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Collection of mRNA-like non-coding RNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

An Alu-like RNA promotes cell differentiation and reduces malignancy of human neuroblastoma cells.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

piRNABank: a web resource on classified and clustered Piwi-interacting RNAs

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Recurrent focal copy-number changes and loss of heterozygosity implicate two noncoding RNAs and one tumor suppressor gene at chromosome 3q13.31 in osteosarcoma.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

ANRIL expression is associated with atherosclerosis risk at chromosome 9p21.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

A liver X receptor (LXR)-beta alternative splicing variant (LXRBSV) acts as an RNA co-activator of LXR-beta

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

S. pombe mei2+ encodes an RNA-binding protein essential for premeiotic DNA synthesis and meiosis I, which cooperates with a novel RNA species meiRNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013714

Role for antisense RNA in regulating circadian clock function in Neurospora crassa

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21112873

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ1138

1 reference

journals/nar/AmaralCGDM11

1474890

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1474890

1 reference

1 reference

1 reference