A protease for 'middle-down' proteomics (Q24609943)

1

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John C Tran

2

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Leonid Zamdborg

3

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Kenneth R Durbin

4

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Mingxi Li

5

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Bryan P Early

7

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Paul M Thomas

8

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Jonathan V Sweedler

9

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Neil L Kelleher

Statistical significance for genomewide studies

10

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language of work or name

English

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publication date

August 2012

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published in

Nature Methods

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volume

9

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page(s)

822-4

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issue

8

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Mapping intact protein isoforms in discovery mode using top-down proteomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Chemistry. Mass spectrometry: bottom-up or top-down?

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

High-throughput middle-down analysis using an orbitrap

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

A robust two-dimensional separation for top-down tandem mass spectrometry of the low-mass proteome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Multiplexed size separation of intact proteins in solution phase for mass spectrometry

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Extended Range Proteomic Analysis (ERPA): a new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and epidermal growth factor receptor (E

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Interpretation of shotgun proteomic data: the protein inference problem

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Substrate specificity of the Escherichia coli outer membrane protease OmpT.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Informatics and multiplexing of intact protein identification in bacteria and the archaea

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Substrate specificity of the integral membrane protease OmpT determined by spatially addressed peptide libraries

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

In vitro folding, purification and characterization of Escherichia coli outer membrane protease ompT.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

In vitro folding of Escherichia coli outer-membrane phospholipase A.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

Gel-eluted liquid fraction entrapment electrophoresis: an electrophoretic method for broad molecular weight range proteome separation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3430368

A novel activity of OmpT. Proteolysis under extreme denaturing conditions.

27 September 2017

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2074

Substrate specificity at the P1' site of Escherichia coli OmpT under denaturing conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2074

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2074

Lipopolysaccharide regions involved in the activation of Escherichia coli outer membrane protease OmpT.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.2074

Toward efficient analysis of >70 kDa proteins with 100% sequence coverage

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22706673

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.2074

1 reference

Dimensions Publication ID

2641992

1000413648

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2641992

1 reference

1 reference

1 reference