Structural basis of ligand binding by a c-di-GMP riboswitch (Q24602499)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19898477%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

title

Structural basis of ligand binding by a c-di-GMP riboswitch (English)

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12 February 2020

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5

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12 February 2020

author name string

Kathryn D Smith

1

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12 February 2020

Sarah V Lipchock

2

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12 February 2020

Tyler D Ames

3

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12 February 2020

Jimin Wang

4

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12 February 2020

Scott A Strobel

6

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12 February 2020

language of work or name

English

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publication date

8 November 2009

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Nature Structural & Molecular Biology

12 February 2020

published in

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12 February 2020

volume

16

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12 February 2020

issue

12

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12 February 2020

page(s)

1218-1223

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The structural basis of cyclic diguanylate signal transduction by PilZ domains

12 February 2020

cites work

1 reference

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Roles of cyclic diguanylate in the regulation of bacterial pathogenesis

7 April 2017

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Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor

7 April 2017

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Structural basis of activity and allosteric control of diguanylate cyclase

7 April 2017

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Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain

7 April 2017

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An mRNA structure in bacteria that controls gene expression by binding lysine

7 April 2017

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An mRNA structure that controls gene expression by binding FMN

7 April 2017

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Geometric nomenclature and classification of RNA base pairs

7 April 2017

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Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase

7 April 2017

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Crystal Structures of YkuI and Its Complex with Second Messenger Cyclic Di-GMP Suggest Catalytic Mechanism of Phosphodiester Bond Cleavage by EAL Domains

7 April 2017

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Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates

7 April 2017

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Phosphorylation-Independent Regulation of the Diguanylate Cyclase WspR

7 April 2017

1 reference

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Structure of BeF3- -modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition

7 April 2017

1 reference

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Version 1.2 of the Crystallography and NMR system

7 April 2017

1 reference

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Likelihood-enhanced fast translation functions

7 April 2017

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Coot: model-building tools for molecular graphics

7 April 2017

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Use of TLS parameters to model anisotropic displacements in macromolecular refinement

7 April 2017

2 references

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7 April 2017

Maximum-likelihood density modification

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850612

Automated MAD and MIR structure solution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850612

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

7 April 2017

2 references

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7 April 2017

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An mRNA structure that controls gene expression by binding S-adenosylmethionine

22 April 2017

1 reference

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Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria

7 April 2017

1 reference

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Principles of c-di-GMP signalling in bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850612

Riboswitches in eubacteria sense the second messenger cyclic di-GMP

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850612

The structural and functional diversity of metabolite-binding riboswitches

7 April 2017

1 reference

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DgrA is a member of a new family of cyclic diguanosine monophosphate receptors and controls flagellar motor function in Caulobacter crescentus

27 September 2017

1 reference

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PilZ domain proteins bind cyclic diguanylate and regulate diverse processes in Vibrio cholerae

27 September 2017

1 reference

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Cyclic di-GMP signaling in bacteria: recent advances and new puzzles.

27 September 2017

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The PilZ domain is a receptor for the second messenger c-di-GMP: the PilZ domain protein YcgR controls motility in enterobacteria

27 September 2017

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Mechanisms of cyclic-di-GMP signaling in bacteria

27 September 2017

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Cyclic di-GMP as a second messenger

27 September 2017

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PilZ domain is part of the bacterial c-di-GMP binding protein

27 September 2017

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Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP.

27 September 2017

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Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT

27 September 2017

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Interplay between cyclic AMP-cyclic AMP receptor protein and cyclic di-GMP signaling in Vibrio cholerae biofilm formation

30 May 2018

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Cyclic-diGMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation

21 January 2018

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Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signalling pathway

21 January 2018

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Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module

21 January 2018

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The kinetics of ligand binding by an adenine-sensing riboswitch

21 January 2018

1 reference

Great times for small molecules: c-di-AMP, a second messenger candidate in Bacteria and Archaea

21 January 2018

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The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

21 January 2018

1 reference

The second messenger bis-(3'-5')-cyclic-GMP and its PilZ domain-containing receptor Alg44 are required for alginate biosynthesis in Pseudomonas aeruginosa

21 January 2018

1 reference

Processing of X-ray diffraction data collected in oscillation mode

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.1702

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19898477%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

12 February 2020

1032908556

0 references

1 reference

2 references

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12 February 2020

2 references

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