An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa (Q24599805)

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English	An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa	scientific article

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An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa (English)

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Fulvio Cruciani

7

object named as

Fulvio Cruciani

author given names

Fulvio

author last names

Cruciani

1 reference

24 November 2023

Beniamino Trombetta

object named as

Beniamino Trombetta

3

author given names

Beniamino

author last names

Trombetta

1 reference

24 November 2023

Andrea Novelletto

object named as

Andrea Novelletto

6

author given names

Andrea

author last names

Novelletto

1 reference

24 November 2023

author name string

Rosaria Scozzari

1

author given names

Rosaria

author last names

Scozzari

1 reference

24 November 2023

Andrea Massaia

2

author given names

Andrea

author last names

Massaia

1 reference

24 November 2023

Giovanna Bellusci

4

author given names

Giovanna

author last names

Bellusci

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24 November 2023

Natalie M Myres

5

author given names

Natalie M

author last names

Myres

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24 November 2023

language of work or name

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publication date

March 2014

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Genome Research

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24

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3

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535-44

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Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Molecular dissection of the basal clades in the human Y chromosome phylogenetic tree

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

An integrated map of genetic variation from 1,092 human genomes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

The great human expansion

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24 March 2017

Estimating the human mutation rate using autozygosity in a founder population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Rate of de novo mutations and the importance of father's age to disease risk

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

The Nubian Complex of Dhofar, Oman: an African middle stone age industry in Southern Arabia

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24 March 2017

The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269

1 reference

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24 March 2017

Variation in genome-wide mutation rates within and between human families

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

A revised root for the human Y chromosomal phylogenetic tree: the origin of patrilineal diversity in Africa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

A new topology of the human Y chromosome haplogroup E1b1 (E-P2) revealed through the use of newly characterized binary polymorphisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

A map of human genome variation from population-scale sequencing

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24 March 2017

Direct measure of the de novo mutation rate in autism and schizophrenia cohorts

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24 March 2017

A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Analysis of genetic inheritance in a family quartet by whole-genome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Human Y chromosome haplogroup R-V88: a paternal genetic record of early mid Holocene trans-Saharan connections and the spread of Chadic languages

1 reference

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24 March 2017

Y chromosome diversity, human expansion, drift, and cultural evolution

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24 March 2017

Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a

1 reference

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24 March 2017

Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions

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24 March 2017

The genetic structure and history of Africans and African Americans

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24 March 2017

Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Y-chromosomal diversity in Lebanon is structured by recent historical events

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

The effect of ancient population bottlenecks on human phenotypic variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Phylogeographic analysis of haplogroup E3b (E-M215) y chromosomes reveals multiple migratory events within and out of Africa

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Rare Deep-Rooting Y Chromosome Lineages in Humans: Lessons for Phylogeography

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

The Southern Route "Out of Africa": Evidence for an Early Expansion of Modern Humans into Arabia

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24 March 2017

Stratigraphic placement and age of modern humans from Kibish, Ethiopia

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24 March 2017

Low-pass DNA sequencing of 1200 Sardinians reconstructs European Y-chromosome phylogeny

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

A revised timescale for human evolution based on ancient mitochondrial genomes

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24 March 2017

Ethiopian genetic diversity reveals linguistic stratification and complex influences on the Ethiopian gene pool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

The Expansion of mtDNA Haplogroup L3 within and out of Africa

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Signatures of the preagricultural peopling processes in sub-Saharan Africa as revealed by the phylogeography of early Y chromosome lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Strong intra- and inter-continental differentiation revealed by Y chromosome SNPs M269, U106 and U152

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

The evolution of human genetic and phenotypic variation in Africa

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Wet phases in the Sahara/Sahel region and human migration patterns in North Africa

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24 March 2017

Bayesian phylogeography finds its roots

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24 March 2017

Human Y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

24 March 2017

Genetic and demographic implications of the Bantu expansion: insights from human paternal lineages

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

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24 March 2017

BEAST: Bayesian evolutionary analysis by sampling trees

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24 March 2017

History of click-speaking populations of Africa inferred from mtDNA and Y chromosome genetic variation

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24 March 2017

Tracing past human male movements in northern/eastern Africa and western Eurasia: new clues from Y-chromosomal haplogroups E-M78 and J-M12

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24 March 2017

Y chromosome sequence variation and the history of human populations

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24 March 2017

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24 March 2017

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24 March 2017

Out of Africa and back again: nested cladistic analysis of human Y chromosome variation

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24 March 2017

Bayesian phylogenetic analysis of combined data

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7 April 2017

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S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories

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7 April 2017

SSAHA: a fast search method for large DNA databases

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

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27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3941117

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27 September 2017

Remarkably little variation in proteins encoded by the Y chromosome's single-copy genes, implying effective purifying selection.

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27 September 2017

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27 September 2017

Proportionally more deleterious genetic variation in European than in African populations.

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27 September 2017

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27 September 2017

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27 September 2017

Recent common ancestry of human Y chromosomes: evidence from DNA sequence data

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27 September 2017

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30 May 2018

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28 November 2018

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10.1101/GR.160788.113

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