CREME: Cis-Regulatory Module Explorer for the human genome (Q24562121)

ORCID Public Data File 2021

author name string

Ivan Ovcharenko

series ordinal

4

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language of work or name

English

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publication date

1 July 2004

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published in

Nucleic Acids Research

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volume

32

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page(s)

W253-6

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issue

Web Server issue

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cites work

Statistical significance for genomewide studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Identifying regulatory networks by combinatorial analysis of promoter elements

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Identification of genes periodically expressed in the human cell cycle and their expression in tumors

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

TRANSFAC: an integrated system for gene expression regulation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

rVista for comparative sequence-based discovery of functional transcription factor binding sites

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

A predictive model for regulatory sequences directing liver-specific transcription.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Identification of regulatory regions which confer muscle-specific gene expression.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

A probabilistic method to detect regulatory modules.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Automatic annotation of genomic regulatory sequences by searching for composite clusters.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441523

Identifying target sites for cooperatively binding factors

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215390

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKH385

0 references

DBLP publication ID

journals/nar/SharanBLO04

1 reference