An ancient evolutionary origin of the Rag1/2 gene locus (Q24545194)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16505374%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

An ancient evolutionary origin of the Rag1/2 gene locus (English)

1 reference

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17 January 2020

4

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17 January 2020

author name string

Sebastian D Fugmann

1

1 reference

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17 January 2020

Cynthia Messier

2

1 reference

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17 January 2020

Laura A Novack

3

1 reference

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17 January 2020

Jonathan P Rast

5

1 reference

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17 January 2020

language of work or name

English

0 references

publication date

27 February 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16505374%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

17 January 2020

published in

1 reference

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17 January 2020

volume

103

1 reference

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17 January 2020

issue

10

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17 January 2020

page(s)

3728-3733

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16505374%20AND%20SRC:MED&resulttype=core&format=json

RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons

17 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals

24 March 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Profile hidden Markov models

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Putting the pieces together: identification and characterization of structural domains in the V(D)J recombination protein RAG1

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Mutations of acidic residues in RAG1 define the active site of the V(D)J recombinase

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombination

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

SMART 4.0: towards genomic data integration

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

The descent of the antibody-based immune system by gradual evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Genomic resources for the study of sea urchin development

27 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

27 September 2017

https://api.crossref.org/works/10.1073%2FPNAS.0509720103

Evolution of innate and adaptive immunity: can we draw a line?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Antigen receptor genes and the evolution of a recombinase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

The central domain of core RAG1 preferentially recognizes single-stranded recombination signal sequence heptamer

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Identification of basic residues in RAG2 critical for DNA binding by the RAG1-RAG2 complex

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Mutations in conserved regions of the predicted RAG2 kelch repeats block initiation of V(D)J recombination and result in primary immunodeficiencies

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Definition of minimal domains of interaction within the recombination-activating genes 1 and 2 recombinase complex

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Genomic catastrophism and the origin of vertebrate immunity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Mutational analysis of RAG1 and RAG2 identifies three catalytic amino acids in RAG1 critical for both cleavage steps of V(D)J recombination

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Echinoderm immunity and the evolution of the complement system

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Evolution of antigen binding receptors

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Complementation of V(D)J recombination deficiency in RAG-1(-/-) B cells reveals a requirement for novel elements in the N-terminus of RAG-1.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

alpha, beta, gamma, and delta T cell antigen receptor genes arose early in vertebrate phylogeny.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Primordial emergence of the recombination activating gene 1 (RAG1): sequence of the complete shark gene indicates homology to microbial integrases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

New insights into V(D)J recombination and its role in the evolution of the immune system

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

The V(D)J recombination activating gene, RAG-1.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Identification of two catalytic residues in RAG1 that define a single active site within the RAG1/RAG2 protein complex.

27 September 2017

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509720103

Loss of ancestral genes in the genomic evolution of Ciona intestinalis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509720103

brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509720103

Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: “waiting for Godot”

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509720103

The homeodomain region of Rag-1 reveals the parallel mechanisms of bacterial and V(D)J recombination

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1450146

Cloning of shark RAG2 and characterization of the RAG1/RAG2 gene locus

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16505374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

VDJ recombination: a transposase goes to work

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16505374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The V(D)J recombination activating protein RAG2 consists of a six-bladed propeller and a PHD fingerlike domain, as revealed by sequence analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16505374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0509720103

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16505374%20AND%20SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

17 January 2020

ADS bibcode

2006PNAS..103.3728F

0 references

4830087

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16505374%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference