Dynamic structure of the SPANX gene cluster mapped to the prostate cancer susceptibility locus HPCX at Xq27 (Q24539022)

6

object named as

William Isaacs

0 references

Jeffrey Trent

8

object named as

Jeffrey M Trent

0 references

author name string

Natalay Kouprina

1

0 references

Adam Pavlicek

2

0 references

Vladimir N Noskov

3

0 references

Greg Solomon

4

0 references

John Otstot

5

0 references

John D Carpten

7

0 references

Joanna Schleutker

9

0 references

J Carl Barrett

10

0 references

Vladimir Larionov

The DNA sequence of the human X chromosome

12

0 references

language of work or name

English

0 references

publication date

November 2005

0 references

published in

Genome Research

0 references

volume

15

0 references

page(s)

1477-86

0 references

issue

11

0 references

cites work

1 reference

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WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences

24 March 2017

1 reference

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BLAT—The BLAST-Like Alignment Tool

24 March 2017

1 reference

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Spermatid-specific expression of the novel X-linked gene product SPAN-X localized to the nucleus of human spermatozoa

24 March 2017

1 reference

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CTp11, a novel member of the family of human cancer/testis antigens

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Basic local alignment search tool

24 March 2017

1 reference

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Identification of a novel gene, LDOC1, down-regulated in cancer cell lines

24 March 2017

1 reference

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LDOC1, a novel MZF-1-interacting protein, induces apoptosis

24 March 2017

1 reference

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Large-scale copy number polymorphism in the human genome

24 March 2017

1 reference

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Exploiting the yeast Saccharomyces cerevisiae for the study of the organization and evolution of complex genomes

24 March 2017

1 reference

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The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Leucine‐zipper protein, LDOC1, inhibits NF‐κB activation and sensitizes pancreatic cancer cells to apoptosis

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

NY-ESO-1 and CTp11 expression may correlate with stage of progression in melanoma

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Recent segmental duplications in the human genome

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Repbase update: a database and an electronic journal of repetitive elements

7 April 2017

1 reference

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Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

MAVID: constrained ancestral alignment of multiple sequences

27 September 2017

1 reference

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Carcinoma of the prostate: inherited susceptibility, somatic gene defects and androgen receptors

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

The SPANX gene family of cancer/testis-specific antigens: rapid evolution and amplification in African great apes and hominids

27 September 2017

1 reference

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Implications of human genome architecture for rearrangement-based disorders: the genomic basis of disease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Molecular genetics of human prostate cancer.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

The complex genetic epidemiology of prostate cancer

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

The cancer/testis genes: review, standardization, and commentary.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Hereditary prostate cancer in African American families: linkage analysis using markers that map to five candidate susceptibility loci

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Genomic organization, incidence, and localization of the SPAN-x family of cancer-testis antigens in melanoma tumors and cell lines

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Inherited predisposition to prostate cancer

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

The human SPANX multigene family: genomic organization, alignment and expression in male germ cells and tumor cell lines.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Complex Evolution of 7E Olfactory Receptor Genes in Segmental Duplications

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Optimum conditions for selective isolation of genes from complex genomes by transformation-associated recombination cloning

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Postcopulatory sexual selection

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Physical and transcript map of the hereditary prostate cancer region at xq27.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Differential nuclear localization of the cancer/testis-associated protein, SPAN-X/CTp11, in transfected cells and in 50% of human spermatozoa

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Coupled homologous and nonhomologous repair of a double-strand break preserves genomic integrity in mammalian cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Gene conversion-like missense mutations in the human cationic trypsinogen gene and insights into the molecular evolution of the human trypsinogen family

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

A double-strand break in a chromosomal LINE element can be repaired by gene conversion with various endogenous LINE elements in mouse cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Double-strand break repair by interchromosomal recombination: suppression of chromosomal translocations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Functional copies of a human gene can be directly isolated by transformation-associated recombination cloning with a small 3' end target sequence.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Genome‐wide scan for prostate cancer susceptibility genes in the Johns Hopkins hereditary prostate cancer families

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Xq27-28 deletions in prostate carcinoma.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

CENSOR--a program for identification and elimination of repetitive elements from DNA sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

A major locus for hereditary prostate cancer in Finland: localization by linkage disequilibrium of a haplotype in the HPCX region.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Combined Genome-Wide Scan for Prostate Cancer Susceptibility Genes

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Expression of SPANX proteins in human-ejaculated spermatozoa and sperm precursors.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Sperm competition games: sperm selection by females.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Gene expression and immunologic consequence of SPAN-Xb in myeloma and other hematologic malignancies

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Linkage analysis of 153 prostate cancer families over a 30-cM region containing the putative susceptibility locus HPCX.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Evidence for a prostate cancer susceptibility locus on the X chromosome.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Statistical tests for detecting gene conversion.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1310635

Confirmation of the HPCX prostate cancer predisposition locus in large Utah prostate cancer pedigrees

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16251457

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Confirmation of the prostate cancer susceptibility locus HPCX in a set of 104 German prostate cancer families

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16251457

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.4212705

1 reference

4771655

4771655

1 reference

1 reference

1 reference