Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease (Q24535057)

2

0 references

Virginijus Šikšnys

7

0 references

Matthias Bochtler

Matthias Bochtler

4

0 references

Saulius Gražulis

1

Saulius Grazulis

0 references

Giedre Tamulaitiene

5

Giedre Tamulaitiene

0 references

Robert Huber

6

Robert Huber

0 references

author name string

Manfred Roessle

Proceedings of the National Academy of Sciences of the United States of America

3

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language of work or name

English

0 references

publication date

1 November 2005

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published in

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volume

102

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issue

44

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page(s)

15797-802

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cites work

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The tyrosyl-DNA phosphodiesterase Tdp1 is a member of the phospholipase D superfamily

24 March 2017

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RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants

24 March 2017

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FokI dimerization is required for DNA cleavage

24 March 2017

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Structure of FokI has implications for DNA cleavage

24 March 2017

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A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues

24 March 2017

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Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold

24 March 2017

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The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1

24 March 2017

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Structure of Ocr from bacteriophage T7, a protein that mimics B-form DNA

24 March 2017

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The first crystal structure of a phospholipase D

24 March 2017

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Crystal structure of a phospholipase D family member

24 March 2017

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Structure of the multimodular endonuclease FokI bound to DNA

24 March 2017

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Raster3D: photorealistic molecular graphics

24 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

24 March 2017

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Refinement of macromolecular structures by the maximum-likelihood method

22 April 2017

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The CCP4 suite: programs for protein crystallography

24 March 2017

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MOLMOL: a program for display and analysis of macromolecular structures

24 March 2017

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ARP/wARP's model-building algorithms. I. The main chain

24 March 2017

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Type II restriction endonucleases: structure and mechanism

7 April 2017

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Mechanisms of coupling between DNA recognition specificity and catalysis in EcoRI endonuclease

27 September 2017

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How the Bfi I restriction enzyme uses one active site to cut two DNA strands

27 September 2017

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The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

EcoRII: a restriction enzyme evolving recombination functions?

27 September 2017

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Asymmetric photocross-linking pattern of restriction endonuclease EcoRII to the DNA recognition sequence

27 September 2017

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Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.

27 September 2017

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Cloning, sequencing, and characterization of a gene cluster involved in EDTA degradation from the bacterium BNC1.

27 September 2017

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SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

Resolving the relationships of resolving enzymes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

Regions of endonuclease EcoRII involved in DNA target recognition identified by membrane-bound peptide repertoires.

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

Dictionary of recurrent domains in protein structures

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

Structural, functional, and evolutionary relationships between lambda-exonuclease and the type II restriction endonucleases

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

BfiI, a restriction endonuclease from Bacillus firmus S8120, which recognizes the novel non-palindromic sequence 5'-ACTGGG(N)5/4-3'.

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases

27 September 2017

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ARF1, a transcription factor that binds to auxin response elements

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266039

Functional domains in Fok I restriction endonuclease.

27 September 2017

1 reference

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Small is beautiful: protein micro-crystallography.

27 September 2017

1 reference

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PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507949102

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507949102

Generation of the BfiI restriction endonuclease from the fusion of a DNA recognition domain to a non-specific nuclease from the phospholipase D superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507949102

Improved Fourier coefficients for maps using phases from partial structures with errors

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507949102

ARP/wARP's model-building algorithms. I. The main chain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507949102

Specific versus non-specific contacts in protein crystals

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16247004

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

On the treatment of negative intensity observations

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0507949102

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1073/PNAS.0507949102

1 reference

release_q4qcz3xbjrfq3ejjhas377cjw4

0 references

0 references

3029900

1 reference

1 reference

1 reference