Synthesis of phylogeny and taxonomy into a comprehensive tree of life (Q21714372)

3

James F

Allman

1 reference

20 August 2022

Ruchi Chaudhary

5

Ruchi

Chaudhary

1 reference

20 August 2022

Lyndon M Coghill

6

Lyndon M

Coghill

1 reference

20 August 2022

Jiabin Deng

8

Jiabin

Deng

1 reference

20 August 2022

Romina Gazis

10

Romina

Gazis

1 reference

20 August 2022

Karl Gude

11

Karl

Gude

1 reference

20 August 2022

Richard H Ree

18

Richard H

Ree

1 reference

20 August 2022

Tiffani Williams

21

Tiffani

Proceedings of the National Academy of Sciences of the United States of America

Williams

1 reference

20 August 2022

language of work or name

English

0 references

publication date

13 October 2015

0 references

published in

0 references

volume

112

0 references

page(s)

12764-9

0 references

issue

41

0 references

cites work

The dawn of open access to phylogenetic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

How many species are there on Earth and in the ocean?

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Species Numbers in Bacteria

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Estimating the timing of early eukaryotic diversification with multigene molecular clocks

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Phylogenomics reshuffles the eukaryotic supergroups

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Eocytes: a new ribosome structure indicates a kingdom with a close relationship to eukaryotes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Broad phylogenomic sampling improves resolution of the animal tree of life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Robinson-Foulds Supertrees

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Phylogenomics revives traditional views on deep animal relationships

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

A higher-level phylogenetic classification of the Fungi

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Lost branches on the tree of life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Horizontal transfer and evolution of prokaryote transposable elements in eukaryotes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

NeXML: rich, extensible, and verifiable representation of comparative data and metadata

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Phylogenomics with incomplete taxon coverage: the limits to inference

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

The global diversity of birds in space and time

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Phylogenetic classification and the universal tree

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Database resources of the National Center for Biotechnology Information

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Origins of major archaeal clades correspond to gene acquisitions from bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Reticulate evolution and the human past: an anthropological perspective

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Analyzing and synthesizing phylogenies using tree alignment graphs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Evolutionary implications of horizontal gene transfer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Predicting total global species richness using rates of species description and estimates of taxonomic effort

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Phylogenetic signal in the eukaryotic tree of life

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Measuring support and finding unsupported relationships in supertrees

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Rooting the eukaryotic tree with mitochondrial and bacterial proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

Assessment of the accuracy of matrix representation with parsimony analysis supertree construction

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

AMI-diagram: Mining Facts from Images

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

Amalgamating source trees with different taxonomic levels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

A congruent phylogenomic signal places eukaryotes within the Archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

An alternative root for the eukaryote tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

Reconstructing patterns of reticulate evolution in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

Phylesystem: a git-based data store for community-curated phylogenetic estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4611642

THE ROLE OF HYBRIDIZATION AND INTROGRESSION IN THE DIVERSIFICATION OF ANIMALS

29 November 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

inferred from DOI database lookup

7 January 2021

based on heuristic

On the Origin of Species

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1423041112

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1073/PNAS.1423041112

1 reference

722392

ADS bibcode

2015PNAS..11212764H

0 references

722392

1 reference

1 reference

1 reference