Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses (Q21261995)

18 August 2022

Chuan Li

1

Chuan

Li

1 reference

18 August 2022

Heidi Rudi

2

Heidi

Rudi

1 reference

18 August 2022

Eric J Stockinger

3

Eric J

Stockinger

1 reference

18 August 2022

Hongmei Cheng

4

Hongmei

Cheng

1 reference

18 August 2022

Moju Cao

5

Moju

Cao

1 reference

18 August 2022

Samuel E Fox

6

Samuel E

Fox

1 reference

18 August 2022

Todd C Mockler

7

Todd C

Mockler

1 reference

18 August 2022

Siri Fjellheim

9

Siri

Fjellheim

1 reference

18 August 2022

Odd Arne Rognli

10

Odd Arne

Rognli

1 reference

18 August 2022

Simen R Sandve

11

Simen R

Sandve

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2229-12-65

18 August 2022

language of work or name

English

0 references

publication date

2012

0 references

published in

BMC Plant Biology

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volume

12

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page(s)

65

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issue

1

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exact match

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cites work

MAFFT version 5: improvement in accuracy of multiple sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Brachypodium distachyon. A new model system for functional genomics in grasses

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Genome sequencing and analysis of the model grass Brachypodium distachyon

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Primer3 on the WWW for general users and for biologist programmers

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Genetic engineering of rice capable of synthesizing fructans and enhancing chilling tolerance

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Direct selection on male attractiveness and female preference fails to produce a response

19 March 2017

1 reference

https://api.crossref.org/works/10.1186/1471-2229-12-65

QTL analyses and comparative genetic mapping of frost tolerance, winter survival and drought tolerance in meadow fescue (Festuca pratensis Huds.).

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Molecular mechanisms underlying frost tolerance in perennial grasses adapted to cold climates.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

An alignment confidence score capturing robustness to guide tree uncertainty

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Applications of ultra-high-throughput sequencing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Fructan and its relationship to abiotic stress tolerance in plants.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Molecular characterization of a putative sucrose:fructan 6-fructosyltransferase (6-SFT) of the cold-resistant Patagonian grass Bromus pictus associated with fructan accumulation under low temperatures

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Duplication and gene conversion in the Drosophila melanogaster genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Characterization of a family of ice-active proteins from the Ryegrass, Lolium perenne

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Tracking the evolution of a cold stress associated gene family in cold tolerant grasses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Plant fructans in stress environments: emerging concepts and future prospects

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Fructans, but not the sucrosyl-galactosides, raffinose and loliose, are affected by drought stress in perennial ryegrass

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

The cold-regulated transcriptional activator Cbf3 is linked to the frost-tolerance locus Fr-A2 on wheat chromosome 5A

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Molecular characterization of sucrose:sucrose 1-fructosyltransferase and sucrose:fructan 6-fructosyltransferase associated with fructan accumulation in winter wheat during cold hardening

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Barley Cbf3 gene identification, expression pattern, and map location

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Fructans insert between the headgroups of phospholipids

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Plant fructans stabilize phosphatidylcholine liposomes during freeze-drying

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Fructan: more than a reserve carbohydrate?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Purification, cloning, and functional expression of sucrose:fructan 6-fructosyltransferase, a key enzyme of fructan synthesis in barley

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Brachypodium distachyon genomics for sustainable food and fuel production

12 September 2017

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Did gene family expansions during the Eocene-Oligocene boundary climate cooling play a role in Pooideae adaptation to cool climates?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Heat-stable antifreeze protein from grass.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Molecular characterization and origin of novel bipartite cold-regulated ice recrystallization inhibition proteins from cereals

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Fructan accumulation and transcription of candidate genes during cold acclimation in three varieties of Poa pratensis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Cold acclimation in bryophytes: low-temperature-induced freezing tolerance in Physcomitrella patens is associated with increases in expression levels of stress-related genes but not with increase in level of endogenous abscisic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Regulation of freezing tolerance and flowering in temperate cereals: the VRN-1 connection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

A cluster of 11 CBF transcription factors is located at the frost tolerance locus Fr-Am2 in Triticum monococcum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Transforming a fructan:fructan 6G-fructosyltransferase from perennial ryegrass into a sucrose:sucrose 1-fructosyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Coordinated expression of functionally diverse fructosyltransferase genes is associated with fructan accumulation in response to low temperature in perennial ryegrass

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Carbohydrate partitioning between upper and lower regions of the crown in oat and rye during cold acclimation and freezing

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Structural, functional, and phylogenetic characterization of a large CBF gene family in barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-65

Ice recrystallization inhibition proteins (IRIPs) and freeze tolerance in the cryophilic Antarctic hair grass Deschampsia antarctica E. Desv

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3487962

Mapping of barley homologs to genes that regulate low temperature tolerance in Arabidopsis

29 November 2018

1 reference

12 December 2020

A perennial ryegrass CBF gene cluster is located in a region predicted by conserved synteny between Poaceae species

1 reference

12 December 2020

Fructosyltransferase and invertase genes evolved by gene duplication and rearrangements: rice, perennial ryegrass, and wheat gene families

1 reference

12 December 2020

CBF gene copy number variation at Frost Resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals

1 reference

12 December 2020

Ice recrystallization inhibition proteins of perennial ryegrass enhance freezing tolerance

1 reference

12 December 2020

Carbohydrate content and glycosidase activities following cold hardening in two grass species.

1 reference

12 December 2020

Fructans interact strongly with model membranes

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2229-12-65

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4275534

OpenCitations bibliographic resource ID

0 references

4275534

1 reference