Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome? (Q21202153)

17 August 2022

5

Juan Cristina

Juan

Cristina

1 reference

17 August 2022

1

Matías Victoria

Matías

Victoria

1 reference

1045656297

Marize Pereira Miagostovich

17 August 2022

series ordinal

3

object named as

Marize Pereira Miagostovich

author given names

Marize Pereira

author last names

Miagostovich

1 reference

17 August 2022

José P Leite

4

José P

Leite

1 reference

1045656297

17 August 2022

language of work or name

English

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publication date

2009

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published in

BMC Research Notes

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volume

2

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issue

1

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page(s)

176

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cites work

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Evidence for a functional RNA element in the hepatitis C virus core gene

19 March 2017

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19 March 2017

1 reference

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A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication

19 March 2017

1 reference

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Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg

19 March 2017

1 reference

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The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication

19 March 2017

1 reference

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Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses

19 March 2017

1 reference

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Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence

19 March 2017

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

19 March 2017

1 reference

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Secondary structure prediction for aligned RNA sequences

19 March 2017

1 reference

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The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses

19 March 2017

1 reference

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Identification of a conserved RNA replication element (cre) within the 3Dpol-coding sequence of hepatoviruses.

7 April 2017

1 reference

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New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features

12 September 2017

1 reference

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Detailed mapping of RNA secondary structures in core and NS5B-encoding region sequences of hepatitis C virus by RNase cleavage and novel bioinformatic prediction methods.

12 September 2017

1 reference

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Functional Dissection of a Poliovirus cis -Acting Replication Element [PV- cre (2C)]: Analysis of Single- and Dual- cre Viral Genomes and Proteins That Bind Specifically to PV- cre RNA

12 September 2017

1 reference

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RNA secondary structure prediction using stochastic context-free grammars and evolutionary history

12 September 2017

1 reference

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Protein-primed RNA synthesis by purified poliovirus RNA polymerase

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749865

Sequence and genomic organization of Norwalk virus

12 September 2017

1 reference

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Genetic differences between blood- and brain-derived viral sequences from human immunodeficiency virus type 1-infected patients: evidence of conserved elements in the V3 region of the envelope protein of brain-derived sequences

12 September 2017

1 reference

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Biochemical and genetic studies of the initiation of human rhinovirus 2 RNA replication: identification of a cis-replicating element in the coding sequence of 2A(pro).

12 September 2017

1 reference

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Genetic and biochemical studies of poliovirus cis-acting replication element cre in relation to VPg uridylylation

27 September 2017

1 reference

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The molecular biology of caliciviruses

27 September 2017

1 reference

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Protein-primed and de novo initiation of RNA synthesis by norovirus 3Dpol

27 September 2017

1 reference

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Constrained evolution with respect to gene overlap of hepatitis B virus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749865

The active form of the norovirus RNA-dependent RNA polymerase is a homodimer with cooperative activity

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749865

Large outbreak of norovirus: the baker who should have known better

29 November 2018

1 reference

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La, PTB, and PAB proteins bind to the 3′ untranslated region of Norwalk virus genomic RNA

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749865

A "slide-back" mechanism for the initiation of protein-primed RNA synthesis by the RNA polymerase of poliovirus

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749865

Calculating nucleic acid secondary structure

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749865

Predicted stem-loop structures and variation in nucleotide sequence of 3' noncoding regions among animal calicivirus genomes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749865

29 November 2018

Identifiers

DOI

10.1186/1756-0500-2-176

0 references