Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset (Q21184169)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15693945%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

title

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset (English)

1 reference

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8 January 2020

1 reference

2

Michael Boutros

Michael

Boutros

1 reference

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8 January 2020

Sung E Choe

1

Sung E

Choe

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15693945%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Alan M Michelson

series ordinal

3

author given names

Alan M

author last names

Michelson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15693945%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

George M Church

series ordinal

4

author given names

George M

author last names

Church

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15693945%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Marc S Halfon

series ordinal

5

author given names

Marc S

author last names

Halfon

1 reference

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8 January 2020

language of work or name

English

0 references

publication date

28 January 2005

1 reference

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8 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15693945%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15693945%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

page(s)

R16

1 reference

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8 January 2020

issue

2

1 reference

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describes a project that uses

8 January 2020

affy

object named as

affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2005-6-2-r16

0 references

cites work

A high performance test of differential gene expression for oligonucleotide arrays

1 reference

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Statistical methods for ranking differentially expressed genes

19 March 2017

1 reference

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Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Significance analysis of microarrays applied to the ionizing radiation response

19 March 2017

1 reference

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Exploration, normalization, and summaries of high density oligonucleotide array probe level data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Summaries of Affymetrix GeneChip probe level data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Expression monitoring by hybridization to high-density oligonucleotide arrays

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

''R"--project for statistical computing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

A comparison of statistical methods for analysis of high density oligonucleotide array data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

A model of molecular interactions on short oligonucleotide microarrays

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Microarray standard data set and figures of merit for comparing data processing methods and experiment designs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=551536

29 November 2018

Identifiers

DOI

10.1186/GB-2005-6-2-R16

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15693945%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

8 January 2020

1028489174

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15693945%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

2 references