Network analysis reveals ecological links between N-fixing bacteria and wood-decaying fungi (Q21132326)

April 2022 Public Data File from Crossref

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Cytoscape

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Cytoscape

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Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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phyloXML: XML for evolutionary biology and comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

19 March 2017

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

19 March 2017

1 reference

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TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

19 March 2017

1 reference

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ProtTest: selection of best-fit models of protein evolution

19 March 2017

1 reference

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19 March 2017

1 reference

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

19 March 2017

1 reference

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A simple method for displaying the hydropathic character of a protein

19 March 2017

1 reference

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Application of phylogenetic networks in evolutionary studies

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Nitrogenase gene diversity and microbial community structure: a cross-system comparison

19 March 2017

1 reference

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Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists

19 March 2017

1 reference

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UCHIME improves sensitivity and speed of chimera detection

19 March 2017

1 reference

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Search and clustering orders of magnitude faster than BLAST

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

7 April 2017

1 reference

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Recent developments in the MAFFT multiple sequence alignment program

7 April 2017

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

7 April 2017

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7 April 2017

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BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

7 April 2017

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Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool

7 April 2017

1 reference

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Microbial interactions: from networks to models

12 September 2017

1 reference

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A global census of nitrogenase diversity

12 September 2017

1 reference

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AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

12 September 2017

1 reference

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Review of indicators and field methods for monitoring biodiversity within national forest inventories. Core variable: deadwood

12 September 2017

1 reference

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A comparison of taxon co-occurrence patterns for macro- and microorganisms

12 September 2017

1 reference

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Spatial scaling of microbial biodiversity

12 September 2017

1 reference

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The natural history of nitrogen fixation

12 September 2017

1 reference

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Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Use of degenerate oligonucleotides for amplification of the nifH gene from the marine cyanobacterium Trichodesmium thiebautii.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

The checkerboard score and species distributions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Decomposition and carbon cycling of dead trees in tropical forests of the central Amazon.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

ALTER: program-oriented conversion of DNA and protein alignments

30 May 2018

1 reference

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Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914916

Wood decomposition, higher fungi, and their role in nutrient redistribution

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Delignification by Wood-Decay Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood

21 January 2018

1 reference

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Implementing large-scale and long-term functional biodiversity research: The Biodiversity Exploratories

21 January 2018

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DensiTree: making sense of sets of phylogenetic trees.

21 January 2018

1 reference

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Segregation of nitrogen fixation and oxygenic photosynthesis in the marine cyanobacterium Trichodesmium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Substrate controls on nitrogen fixation and respiration in woody debris from the Pacific Northwest, USA

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Carbon allocation in forest ecosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

Bosque: integrated phylogenetic analysis software

21 January 2018

1 reference

12 December 2020

Evolution: spatial scaling of microbial interactions

1 reference

12 December 2020

Temporal and Spatial Distribution of the nifH Gene of N(2) Fixing Bacteria in Forests and Clearcuts in Western Oregon

1 reference

12 December 2020

Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil

1 reference

12 December 2020

Wood-decaying fungi in the forest: conservation needs and management options

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

Effects of moisture, temperature and decomposition stage on respirational carbon loss from coarse woody debris (CWD) of important European tree species

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

Creating the CIPRES Science Gateway for inference of large phylogenetic trees

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

Plant traits and wood fates across the globe: rotted, burned, or consumed?

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

Dissolved organic carbon from European beech logs: Patterns of input to and retention by surface soil

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088141

7 January 2021

10.1371/JOURNAL.PONE.0088141

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release_jb4sik2eenc4flaxhaujtspab4

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Fatcat

https://api.fatcat.wiki/v0/release/jb4sik2eenc4flaxhaujtspab4

24 November 2022

mapped directly with Wikidata item

3914273

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1 reference

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