Structural basis of rotavirus RNA chaperone displacement and RNA annealing (Q114371092)

1

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Kira Bartnik

2

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Luca Venditti

3

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Julia Acker

4

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Emma H Gail

5

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Alice Colyer

6

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Chen Davidovich

7

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Don C Lamb

8

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Roman Tuma

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Antonio N Calabrese

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Alexander Borodavka

Proceedings of the National Academy of Sciences of the United States of America

11

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language of work or name

English

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publication date

12 October 2021

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published in

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volume

118

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issue

41

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copyright license

Creative Commons Attribution 4.0 International

start time

6 October 2021

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

Simian rotavirus A/SA11

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based on heuristic

inferred from Methods description

Bovine rotavirus strain RF

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based on heuristic

inferred from Methods description

cites work

Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation.

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

PAM: A Framework for Integrated Analysis of Imaging, Single-Molecule, and Ensemble Fluorescence Data

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Disordered RNA chaperones can enhance nucleic acid folding via local charge screening

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Liquid–liquid phase separation underpins the formation of replication factories in rotaviruses

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Rotavirus non-structural proteins: structure and function

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Assortment and packaging of the segmented rotavirus genome.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Cryoelectron microscopy structures of rotavirus NSP2-NSP5 and NSP2-RNA complexes: implications for genome replication.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Hfq chaperone brings speed dating to bacterial sRNA

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Multimers formed by the rotavirus nonstructural protein NSP2 bind to RNA and have nucleoside triphosphatase activity.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Challenges and opportunities in cryo-EM single-particle analysis

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Trans-Acting RNA-RNA Interactions in Segmented RNA Viruses

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

CRISPR-Csy4-Mediated Editing of Rotavirus Double-Stranded RNA Genome

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

RNA misfolding and the action of chaperones

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

WebLogo: A Sequence Logo Generator

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Rotavirus replication: plus-sense templates for double-stranded RNA synthesis are made in viroplasms

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

RNA chaperones, RNA annealers and RNA helicases

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Protein-mediated RNA folding governs sequence-specific interactions between rotavirus genome segments

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Reverse genetics of rotavirus

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

MolProbity: all-atom structure validation for macromolecular crystallography

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Identification and characterization of the helix-destabilizing activity of rotavirus nonstructural protein NSP2.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Nonstructural proteins involved in genome packaging and replication of rotaviruses and other members of the Reoviridae

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Structure-function analysis of rotavirus NSP2 octamer by using a novel complementation system

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Fiji: an open-source platform for biological-image analysis

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Reassortment in segmented RNA viruses: mechanisms and outcomes

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

RNA chaperones and the RNA folding problem

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Characterization of rotavirus NSP2/NSP5 interactions and the dynamics of viroplasm formation

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Entirely plasmid-based reverse genetics system for rotaviruses

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Evidence that avian reovirus σNS is an RNA chaperone: implications for genome segment assortment

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Acidic C-terminal domains autoregulate the RNA chaperone Hfq

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Crystallographic Analysis of Rotavirus NSP2-RNA Complex Reveals Specific Recognition of 5' GG Sequence for RTPase Activity

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

On the mechanism of Trolox as antiblinking and antibleaching reagent

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Comprehensive Identification of RNA-Binding Domains in Human Cells.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Genome packaging in multi-segmented dsRNA viruses: distinct mechanisms with similar outcomes

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

RNA chaperone activity and RNA-binding properties of the E. coli protein StpA.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Single-molecule spectroscopic methods

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Coot: model-building tools for molecular graphics

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Real-space refinement in PHENIX for cryo-EM and crystallography

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Hfq and its constellation of RNA

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Online Hydrogen-Deuterium Exchange Traveling Wave Ion Mobility Mass Spectrometry (HDX-IM-MS): a Systematic Evaluation

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Processing of Structurally Heterogeneous Cryo-EM Data in RELION.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Electrostatics of nanosystems: application to microtubules and the ribosome

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

DEAD-box proteins as RNA helicases and chaperones

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

A novel form of rotavirus NSP2 and phosphorylation-dependent NSP2-NSP5 interactions are associated with viroplasm assembly

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Combining MFD and PIE for accurate single-pair Förster resonance energy transfer measurements.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

RNA structure: reading the ribosome

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Rotavirus protein involved in genome replication and packaging exhibits a HIT-like fold

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

UCSF ChimeraX: Meeting Modern Challenges in Visualization and Analysis.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Multiple, Switchable Protein:RNA Interactions Regulate Human Immunodeficiency Virus Type 1 Assembly

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Histidine triad-like motif of the rotavirus NSP2 octamer mediates both RTPase and NTPase activities

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Proteins That Chaperone RNA Regulation

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Calicivirus VP2 forms a portal-like assembly following receptor engagement

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Insights into the mechanisms of RNA secondary structure destabilization by the HIV-1 nucleocapsid protein

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

RNA exploits an exposed regulatory site to inhibit the enzymatic activity of PRC2

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Probing the sites of interactions of rotaviral proteins involved in replication.

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Phosphorylation cascade regulates the formation and maturation of rotaviral replication factories

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Stability of local secondary structure determines selectivity of viral RNA chaperones

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Recombinant Rotaviruses Rescued by Reverse Genetics Reveal the Role of NSP5 Hyperphosphorylation in the Assembly of Viral Factories

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Namdinator - automatic molecular dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

At last: a fully tractable, plasmid only based reverse genetics system for rotavirus

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Kinetics of Folding of Proteins and RNA

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118

Principles of RNA recruitment to viral ribonucleoprotein condensates in a segmented dsRNA virus

7 October 2022

1 reference

https://api.crossref.org/works/10.1073/PNAS.2100198118