Horizontal gene transfer in the evolution of photosynthetic eukaryotes (Q111629317)

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

subtitle

HGT in plants (English)

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

main subject

horizontal gene transfer

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Jinling HUANG

1

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Jipei YUE

series ordinal

2

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

publication date

25 December 2012

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published in

Journal of Systematics and Evolution

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volume

51

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page(s)

13-29

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issue

1

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Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes.

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Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast

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Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer

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The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins

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Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

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Electron Microscopic Evidence for Chloroplast Fusion in Zygotes of Chlamydomonos reinhardii

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Adaptive evolution of C(4) photosynthesis through recurrent lateral gene transfer.

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Unity in variety--the pan-genome of the Chlamydiae

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Lateral gene transfer and parallel evolution in the history of glutathione biosynthesis genes

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Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria.

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Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

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Tracing the Thread of Plastid Diversity through the Tapestry of Life.

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Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids.

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Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor

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You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes.

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Uprooting the tree of life

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What makes a chloroplast? Reconstructing the establishment of photosynthetic symbioses

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Comparative genomics of trypanosomatid parasitic protozoa

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A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

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PhyloGenie: automated phylome generation and analysis

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Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis

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Prokaryotic evolution in light of gene transfer

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Horizontal gene transfer, genome innovation and evolution

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Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer

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Evidence of a chimeric genome in the cyanobacterial ancestor of plastids

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Functional chloroplasts in metazoan cells - a unique evolutionary strategy in animal life

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Plant-like traits associated with metabolism of Trypanosoma parasites

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Illuminating the Evolutionary History of Chlamydiae

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Ancient horizontal gene transfer can benefit phylogenetic reconstruction

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Concerted gene recruitment in early plant evolution.

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Ancient gene transfer as a tool in phylogenetic reconstruction

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Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum

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A first glimpse into the pattern and scale of gene transfer in Apicomplexa

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The Arabidopsis STICHEL gene is a regulator of trichome branch number and encodes a novel protein.

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Horizontal gene transfer in microbial genome evolution

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Horizontal gene transfer accelerates genome innovation and evolution.

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A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Targeting of nucleus-encoded proteins to chloroplasts in plants

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Origin and diversification of eukaryotes.

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Chromalveolates and the evolution of plastids by secondary endosymbiosis

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The endosymbiotic origin, diversification and fate of plastids

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Lateral transfer of introns in the cryptophyte plastid genome

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Plastids are widespread and ancient in parasites of the phylum Apicomplexa

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Did trypanosomatid parasites have photosynthetic ancestors?

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

The genome of the protist parasite Entamoeba histolytica

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora

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A plastid in the making: evidence for a second primary endosymbiosis

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Evolutionary origins of metabolic compartmentalization in eukaryotes.

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Gene Transfer from Organelles to the Nucleus: How Much, What Happens, and Why?

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Early evolution without a tree of life

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Cyanobacterial contribution to the genomes of the plastid-lacking protists

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Origins of a cyanobacterial 6-phosphogluconate dehydrogenase in plastid-lacking eukaryotes

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Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids

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Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D

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Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus

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Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

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A photosynthetic alveolate closely related to apicomplexan parasites.

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Lateral transfer of genes from fungi underlies carotenoid production in aphids

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Evidence for horizontal gene transfer from bacteroidetes bacteria to dinoflagellate minicircles.

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Genomic footprints of a cryptic plastid endosymbiosis in diatoms

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Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions

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Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes.

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Adaptive eukaryote-to-eukaryote lateral gene transfer: stress-related genes of algal origin in the closest unicellular relatives of animals

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Ancient gene transfer from algae to animals: mechanisms and evolutionary significance

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Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis

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Trafficking of protein into the recently established photosynthetic organelles of Paulinella chromatophora

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes

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Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

A new scenario of plastid evolution: plastid primary endosymbiosis before the divergence of the "Plantae," emended

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Mosaic origin of the heme biosynthesis pathway in photosynthetic eukaryotes

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Phylogenetic analyses suggest lateral gene transfer from the mitochondrion to the apicoplast

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Horizontal gene transfer in trypanosomatids

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Speciation in Chlamydia: genomewide phylogenetic analyses identified a reliable set of acquired genes.

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Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates

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Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Transcriptomic evidence for the expression of horizontally transferred algal nuclear genes in the photosynthetic sea slug, Elysia chlorotica

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages

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Intracellular spheroid bodies of Rhopalodia gibba have nitrogen-fixing apparatus of cyanobacterial origin

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Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

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Why have organelles retained genomes?

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Whole-Genome Analysis of Photosynthetic Prokaryotes

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Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions.

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Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic.

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Differential gene retention in plastids of common recent origin.

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Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment

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An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi.

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Horizontal gene transfer in plants

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

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Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae

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CMP-KDO synthetase: a plant gene borrowed from gram-negative eubacteria.

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Solar-powered sea slugs. Mollusc/algal chloroplast symbiosis

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Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES(1).

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Reducing the genome size of organelles favours gene transfer to the nucleus

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Decoding the genomic tree of life

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

The mitochondrial and plastid genomes of Volvox carteri: bloated molecules rich in repetitive DNA

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

The role of hybridization in plant speciation

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Plastid endosymbiosis, genome evolution and the origin of green plants.

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Experimental design and statistical rigor in phylogenomics of horizontal and endosymbiotic gene transfer

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Are algal genes in nonphotosynthetic protists evidence of historical plastid endosymbioses?

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Gene transfer in the evolution of parasite nucleotide biosynthesis

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Genetic complementation in apicomplexan parasites

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Horizontally acquired DAP pathway as a unit of self-regulation

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Algal genes in the closest relatives of animals

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Evidence for acquisition of virulence effectors in pathogenic chytrids

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Eukaryotic and eubacterial contributions to the establishment of plastid proteome estimated by large-scale phylogenetic analyses.

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Host origin of plastid solute transporters in the first photosynthetic eukaryotes

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata

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https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Interpreting the universal phylogenetic tree

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

On the evolution of cells

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Photosynthesis: what color was its origin?

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Evolution of plant nucleotide-sugar interconversion enzymes

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Horizontal gene transfer by the parasitic plant Striga hermonthica

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Phylogenetic analyses of plastid-originated proteins imply universal endosymbiosis in ancestors of animals and fungi.

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Widespread impact of horizontal gene transfer on plant colonization of land

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Algal genes in aplastidic eukaryotes are not necessarily derived from historical plastids

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events

1 reference

https://api.crossref.org/v1/works/10.1111/j.1759-6831.2012.00237.x

Cryptosporidium parvum appears to lack a plastid genome

1 reference