IDSM ChemWebRDF: SPARQLing small-molecule datasets (Q106823303)

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SPARQL 1.1 Query Language W3C Recommendation

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7

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9

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SPARQL 1.1 Federated Query

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Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

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10

Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data

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11

Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data

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12

Linking the Resource Description Framework to cheminformatics and proteochemometrics

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14

The ChEMBL database as linked open data

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15

Linked open drug data for pharmaceutical research and development

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17

Open PHACTS: semantic interoperability for drug discovery

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18

UniProt: the universal protein knowledgebase

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19

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases

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20

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The ChEMBL bioactivity database: an update

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ChEMBL: towards direct deposition of bioassay data

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The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

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The neXtProt knowledgebase on human proteins: current status

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The neXtProt knowledgebase in 2020: data, tools and usability improvements

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25

Updates in Rhea: SPARQLing biochemical reaction data

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26

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format

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27

WikiPathways: capturing the full diversity of pathway knowledge

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28

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

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29

The DisGeNET knowledge platform for disease genomics: 2019 update

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30

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.

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31

The EBI RDF platform: linked open data for the life sciences

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NBDC RDF portal: a comprehensive repository for semantic data in life sciences

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Evolving BioAssay Ontology (BAO): modularization, integration and applications

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34

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Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

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The Gene Ontology Resource: 20 years and still GOing strong

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Transforming the Medical Subject Headings into Linked Data: Creating the Authorized Version of MeSH in RDF

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The Chemical Information Ontology: provenance and disambiguation for chemical data on the biological semantic web

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The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery

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EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

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BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

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41

FaBiO and CiTO: Ontologies for describing bibliographic resources and citations

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43

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Key choices in the design of Simple Knowledge Organization System (SKOS)

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Sachem: a chemical cartridge for high-performance substructure search.

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uses method in cited work

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Interoperable chemical structure search service

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uses method in cited work

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Desiderata for an authoritative Representation of MeSH in RDF

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Identifiers.org - Compact Identifier Services in the Cloud

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54

The NCBI Taxonomy database

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Advanced SPARQL querying in small molecule databases

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