Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism (Q59335062)

(2S,6R)-10-formyltetrahydrofolic acid

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3-(beta-D-ribofuranosyl)uric acid

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(4R)-4-{[3,6-dideoxy-4-O-(1H-indol-3-ylcarbonyl)-alpha-L-arabino-hexopyranosyl]oxy}valeric acid

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beta- D- sedoheptulopyranose

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7,8-dihydro-8-oxoguanine

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1D-myo-inositol 1,2-cyclic phosphate

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nicotinic acid D-ribonucleotide

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9E-Heptadecenoic acid

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S-adenosyl-L-homocysteine

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(S,S)-2,6-diaminopimelic acid

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(2S)-2-azaniumyl-4-oxobutanoate

4-guanidinobutyric acid

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(2S)-2-amino-4-oxobutanoic acid

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phosphorylethanolamine

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N,N-dimethylglycine zwitterion

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deoxyadenosine 5'-monophosphate

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adenosine monophosphate

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uridine diphosphate glucose

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(4RS)-4-hydroxy-L-proline

N-acetyl-L-phenylalanine

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1,2-dihydroxy-5-(methylthio)pent-1-en-3-one

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beta-L-fucose 1-phosphate

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thiomorpholine-3-carboxylic acid

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(R)-2-hydroxy-2-methylbutyronitrile

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(R)-3-hydroxybutyric acid

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D-glucosamine 6-phosphate

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2-aminopteridine-4,7-diol

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beta-D-glucose 6-phosphate

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2-phospho-D-glyceric acid

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(3R)-3-hydroxy-3-methyl-5-(phosphonooxy)pentanoic acid

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sn-glycero-3-phosphocholine

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uridine 5'-triphosphoric acid

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(RS)-3-phosphoglyceric acid

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(2S)-2-hydroxy-2-propan-2-ylbutanedioic acid

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(2S)-2,3,4,5-Tetrahydropyridine-2-carboxylic acid

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2-amino-3-hydroxybenzoic acid

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cytidine triphosphate

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isopentenyl pyrophosphate

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guanosine 5'-diphosphate (RRSR form)

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(E)-2,3-dimethylacrylic acid

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α-aminoisobutyric acid

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(R)-glyceryl 1-phosphate

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1-O-palmitoyl-sn-glycero-3-phosphocholine

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(S)-2-hydroxyglutaric acid

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(2S)-hydroxy(4-hydroxyphenyl)ethanenitrile

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DL-p-hydroxyphenyl lactic acid

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1-(sn-glycero-3-phospho)-1D-myo-inositol

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methionine sulfoximine

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2,3,4-trihydroxybutanoic acid

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(S)-3-hydroxyisobutyric acid

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N(2)-acetyl-L-ornithine

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guanosine monophosphate

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all-cis-docosa-7,10,13,16-tetraenoic acid

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flavin adenine dinucleotide

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N-acetyl-L-aspartic acid

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3-hydroxybenzoic acid

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N(6)-(1,2-dicarboxyethyl)-AMP

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5-guanidino-2-oxopentanoic acid

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6-phospho-D-gluconic acid

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UDP N-acetyl-alpha-D-glucosamine

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[5-(2,4-Dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

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dihydroxyacetone phosphate

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4-trimethylammoniobutanoate

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1-aminocyclopropanecarboxylic acid

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2-Aminopropanedioic Acid

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(R)-pyroglutamic acid

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2-deoxy-alpha-D-ribose 1-phosphate

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4-hydroxy-2-oxoglutaric acid

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3-O-beta-D-galactosyl-sn-glycerol

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O-propanoylcarnitine (internal charge)

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D-galactono-1,4-lactone

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alpha,alpha-trehalose

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nicotinamide ribotide

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indole-3-pyruvic acid

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3-aminoisobutyric acid

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taurodeoxycholic acid

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5-hydroxyindole-3-acetic acid

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2-hydroxybenzenepropanoic acid

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sedoheptulose 7-phosphate

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(4S,5S)-5'-methylthioadenosine

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2-methylpropanoic acid

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dihomo-γ-linolenic acid

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S(6)-acetyldihydrolipoamide

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N(2)-phenylacetylglutamine

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L-α-aminobutyric acid

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7-deaza-7-aminomethyl-guanine

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7-aminomethyl-7-deazaguanine

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N(pros)-methyl-L-histidine

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indole-3-carboxaldehyde

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(S)-2-acetyl-2-hydroxybutanoic acid

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alpha-ketoglutaric acid

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N-acetylglutamic acid

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flavin mononucleotide

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α-ketoisocaproic acid

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guanosine cyclic 3',5'-phosphate

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adenosine cyclic phosphate

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glycodeoxycholic acid

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4'-phosphopantetheine

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4-(trimethylammonio)butanoic acid

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3-hydroxypropionic acid

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formiminoglutamic acid

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DL-N-carbamoylaspartic acid

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(1-Ribosylimidazole)-4-acetate

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alpha-D-glucose-6-phosphate

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2-pyridone-5-carboxylic acid

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N-carbamoylputrescine

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N-acetyl-D-galactosamine

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N-Acetyl-D-Glucosamine

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CDP-choline (neutral charge)

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(2E,4Z)-2-aminohexa-2,4-dienedioic acid

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Phosphoenolpyruvic acid

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N-methyl-2-pyrrolidone

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adenosine triphosphate

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adenosine diphosphate

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4-hydroxyphenylacetic acid

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alpha,alpha-trehalose 6-phosphate

uridine 5'-diphosphate

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(S)-α-glycerophosphorylethanolamine

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N-4-hydroxyphenylacetylglutamic acid

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3-ethyl-3-methylpyruvic acid

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diethyl hydrogen phosphate

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all-cis-icosa-11,14,17-trienoic acid

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pyrrole-2-carboxylic acid

5-hydroxyisouric acid

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1-palmitoyl-2-linoleoyl-3-oleoyl-sn-glycerol

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4-hydroxybutyric acid

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guanosine triphosphate

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2-phosphoglycolic acid

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3-methyl-2-oxobutyric acid

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eicosapentaenoic acid

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6-acetamido-2-oxohexanoic acid

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cytidine monophosphate

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N(1)-acetylspermidine

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hydantoin-5-propionic acid

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(11Z,14Z)-icosadienoic acid

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(S)-2-hydroxybutyric acid

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12

Nicolas Le Novère

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Michael Witting

1

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Janna Hastings

2

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Olivia Casanueva

18

Olivia Casanueva

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Christoph Kaleta

17

Christoph Kaleta

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Nathan E. Lewis

15

Nathan E Lewis

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Arwen W Gao

Arwen W Gao

8

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Riekelt H Houtkooper

Riekelt H Houtkooper

10

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Michael Wakelam

9

Michael J O Wakelam

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author name string

Nicolas Rodriguez

3

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Chintan J Joshi

4

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Jake P N Hattwell

5

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Paul R Ebert

6

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Michel van Weeghel

7

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Abraham Mains

11

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Sean Sadykoff

13

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Frank Schroeder

14

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Horst-Joachim Schirra

full work available at URL

16

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language of work or name

English

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publication date

2018

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https://www.frontiersin.org/articles/10.3389/fmolb.2018.00096/pdf

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19 March 2024

https://api.unpaywall.org/v2/10.3389/fmolb.2018.00096?email=unpaywall_01@example.com

published in

Frontiers in molecular biosciences

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volume

5

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page(s)

96

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copyright license

Creative Commons Attribution 4.0 International

start time

14 November 2018

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April 2022 Public Data File from Crossref

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19 March 2024

https://api.unpaywall.org/v2/10.3389/fmolb.2018.00096?email=unpaywall_01@example.com

access restriction status

open access

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inferred from online access status

cites work

The glycosylceramides of the nematode Caenorhabditis elegans contain an unusual, branched-chain sphingoid base

1 reference

12 December 2020

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

1 reference

12 December 2020

A structure-based anatomy of the E.coli metabolome

1 reference

12 December 2020

Network-based prediction of human tissue-specific metabolism

1 reference

12 December 2020

A 13C isotope labeling strategy reveals the influence of insulin signaling on lipogenesis in C. elegans.

1 reference

12 December 2020

Update of the LIPID MAPS comprehensive classification system for lipids

1 reference

12 December 2020

Long-lived mitochondrial (Mit) mutants of Caenorhabditis elegans utilize a novel metabolism

1 reference

12 December 2020

Maradolipids: Diacyltrehalose Glycolipids Specific to Dauer Larva in Caenorhabditis elegans

1 reference

12 December 2020

iMAT: an integrative metabolic analysis tool

1 reference

12 December 2020

Functional integration of a metabolic network model and expression data without arbitrary thresholding.

1 reference

12 December 2020

NMR-based stable isotope resolved metabolomics in systems biochemistry

1 reference

12 December 2020

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.

1 reference

12 December 2020

Comparative metabolomics reveals biogenesis of ascarosides, a modular library of small-molecule signals in C. elegans

1 reference

12 December 2020

Glycogen and its metabolism: some new developments and old themes

1 reference

12 December 2020

A modular library of small molecule signals regulates social behaviors in Caenorhabditis elegans

1 reference

12 December 2020

Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT

1 reference

12 December 2020

Targeted metabolomics reveals a male pheromone and sex-specific ascaroside biosynthesis in Caenorhabditis elegans

1 reference

12 December 2020

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

1 reference

12 December 2020

A metabolic signature for long life in the Caenorhabditis elegans Mit mutants

1 reference

12 December 2020

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

1 reference

12 December 2020

Association with soil bacteria enhances p38-dependent infection resistance in Caenorhabditis elegans

1 reference

12 December 2020

Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE

1 reference

12 December 2020

Metformin retards aging in C. elegans by altering microbial folate and methionine metabolism.

1 reference

12 December 2020

A novel sphingolipid-TORC1 pathway critically promotes postembryonic development in Caenorhabditis elegans

1 reference

12 December 2020

Reduced insulin/insulin-like growth factor-1 signaling and dietary restriction inhibit translation but preserve muscle mass in Caenorhabditis elegans

1 reference

12 December 2020

Proposed minimum reporting standards for chemical analysis

1 reference

12 December 2020

Path2Models: large-scale generation of computational models from biochemical pathway maps

1 reference

12 December 2020

Comparative metabolomics reveals endogenous ligands of DAF-12, a nuclear hormone receptor, regulating C. elegans development and lifespan

1 reference

12 December 2020

In vivo metabolic flux profiling with stable isotopes discriminates sites and quantifies effects of mitochondrial dysfunction in C. elegans.

1 reference

12 December 2020

Fast reconstruction of compact context-specific metabolic network models

1 reference

12 December 2020

BioModels: ten-year anniversary

1 reference

12 December 2020

Methylation of ribosomal RNA by NSUN5 is a conserved mechanism modulating organismal lifespan.

1 reference

12 December 2020

Promoting health and longevity through diet: from model organisms to humans

1 reference

12 December 2020

Measuring Food Intake and Nutrient Absorption in Caenorhabditis elegans.

1 reference

12 December 2020

DNA Methylation on N6-Adenine in C. elegans

1 reference

12 December 2020

Using Genome-scale Models to Predict Biological Capabilities

1 reference

12 December 2020

The Caenorhabditis elegans lipidome: A primer for lipid analysis in Caenorhabditis elegans

1 reference

12 December 2020

Using C. elegans for aging research

1 reference

12 December 2020

PubChem Substance and Compound databases

1 reference

12 December 2020

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology

1 reference

12 December 2020

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

1 reference

12 December 2020

MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks

1 reference

12 December 2020

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

1 reference

12 December 2020

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

1 reference

12 December 2020

Data standards can boost metabolomics research, and if there is a will, there is a way

1 reference

12 December 2020

The metabolic regulation of aging

1 reference

12 December 2020

Benchmarking Procedures for High-Throughput Context Specific Reconstruction Algorithms

1 reference

12 December 2020

The Role of Dafachronic Acid Signaling in Development and Longevity in Caenorhabditis elegans: Digging Deeper Using Cutting-Edge Analytical Chemistry

1 reference

12 December 2020

C. elegans as a model organism for human mitochondrial associated disorders

1 reference

12 December 2020

Reconstruction of Tissue-Specific Metabolic Networks Using CORDA

1 reference

12 December 2020

Identification of a dTDP-rhamnose biosynthetic pathway that oscillates with the molting cycle in Caenorhabditis elegans

1 reference

12 December 2020

SBtab: a flexible table format for data exchange in systems biology

1 reference

12 December 2020

The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model

1 reference

12 December 2020

A Caenorhabditis elegans Genome-Scale Metabolic Network Model

1 reference

12 December 2020

A Genome-Scale Database and Reconstruction of Caenorhabditis elegans Metabolism

1 reference

12 December 2020

Caenorhabditis elegans responses to bacteria from its natural habitats

1 reference

12 December 2020

Deep Proteome Analysis Identifies Age-Related Processes in C. elegans

1 reference

12 December 2020

Efficient Reconstruction of Predictive Consensus Metabolic Network Models.

1 reference

12 December 2020

A living model for obesity and aging research: Caenorhabditis elegans

1 reference

12 December 2020

SPLASH, a hashed identifier for mass spectra

1 reference

12 December 2020

KEGG: new perspectives on genomes, pathways, diseases and drugs

1 reference

12 December 2020

Phosphorylated glycosphingolipids essential for cholesterol mobilization in Caenorhabditis elegans

1 reference

12 December 2020

Biosynthesis of Modular Ascarosides in C. elegans

1 reference

12 December 2020

Caenorhabditis elegans as a Model for Microbiome Research

1 reference

12 December 2020

Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics.

1 reference

12 December 2020

Host-Microbe Co-metabolism Dictates Cancer Drug Efficacy in C. elegans

1 reference

12 December 2020

The Profile and Dynamics of RNA Modifications in Animals.

1 reference

12 December 2020

The Natural Biotic Environment of Caenorhabditis elegans.

1 reference

12 December 2020

A sensitive mass spectrometry platform identifies metabolic changes of life history traits in C. elegans

1 reference

12 December 2020

Comprehensive single-cell transcriptional profiling of a multicellular organism.

1 reference

12 December 2020

Automated assembly of species metabolomes through data submission into a public repository

1 reference

12 December 2020

WormBase 2017: molting into a new stage.

1 reference

12 December 2020

HMDB 4.0: the human metabolome database for 2018.

1 reference

12 December 2020

Metabolomic "Dark Matter" Dependent on Peroxisomal β-Oxidation in Caenorhabditis elegans.

1 reference

12 December 2020

Dynamic Nuclear Polarization Opens New Perspectives for NMR Spectroscopy in Analytical Chemistry.

1 reference

12 December 2020

Metabolic shift from glycogen to trehalose promotes lifespan and healthspan in Caenorhabditis elegans

1 reference

12 December 2020

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

1 reference

12 December 2020

SBML Level 3 Package: Flux Balance Constraints version 2

1 reference

12 December 2020

Biosynthetic tailoring of existing ascaroside pheromones alters their biological function in C. elegans.

1 reference

12 December 2020

Natural genetic variation in identified genomic loci controlling metabolite levels

1 reference

12 December 2020

Structure and conserved function of iso-branched sphingoid bases from the nematode

1 reference

12 December 2020

ChemSpider: An Online Chemical Information Resource

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1021/ED100697W