RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle (Q36322433)

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English	RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle	scientific article

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13 March 2020

RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle (English)

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13 March 2020

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transcriptomics

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Gianluca Mazzoni

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13 March 2020

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13 March 2020

Haja N. Kadarmideen

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13 March 2020

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M S Salleh

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13 March 2020

J K Höglund

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13 March 2020

D W Olijhoek

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13 March 2020

P Løvendahl

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24 March 2017

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13 March 2020

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13 March 2020

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13 March 2020

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13 March 2020

258

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13 March 2020

describes a project that uses

object named as

DESeq2

DESeq2 R package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Genetic parameters for dry matter intake in primiparous Holstein, Nordic Red, and Jersey cows in the first half of lactation

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Copy number variations and genome-wide associations reveal putative genes and metabolic pathways involved with the feed conversion ratio in beef cattle

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Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.

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Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

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30 September 2017

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30 September 2017

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30 September 2017

Heterogeneity in genetic and nongenetic variation and energy sink relationships for residual feed intake across research stations and countries

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30 September 2017

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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30 September 2017

STRING v10: protein-protein interaction networks, integrated over the tree of life

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Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model

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HTSeq--a Python framework to work with high-throughput sequencing data

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30 September 2017

A comparative study of techniques for differential expression analysis on RNA-Seq data

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30 September 2017

Genome-wide association and systems genetic analyses of residual feed intake, daily feed consumption, backfat and weight gain in pigs

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30 September 2017

The effect of dietary fat intake on hepatic gene expression in LG/J AND SM/J mice.

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30 September 2017

Reducing milking frequency during nutrient restriction has no effect on the hepatic transcriptome of lactating dairy cattle

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30 September 2017

Expression of genes controlling fat deposition in two genetically diverse beef cattle breeds fed high or low silage diets.

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STAR: ultrafast universal RNA-seq aligner

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RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance

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30 September 2017

Triennial Lactation Symposium: Opportunities for improving milk production efficiency in dairy cattle

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30 September 2017

Negative energy balance and hepatic gene expression patterns in high-yielding dairy cows during the early postpartum period: a global approach.

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Gene ontology analysis for RNA-seq: accounting for selection bias

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30 September 2017

Fasting-induced hepatic production of DHEA is regulated by PGC-1alpha, ERRalpha, and HNF4alpha

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RNA-Seq: a revolutionary tool for transcriptomics

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30 September 2017

The DGAT2 gene is a candidate for the dissociation between fatty liver and insulin resistance in humans

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30 September 2017

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

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30 September 2017

The role of acyl-CoA:diacylglycerol acyltransferase (DGAT) in energy metabolism

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30 September 2017

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30 September 2017

DGAT and triglyceride synthesis: a new target for obesity treatment?

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30 September 2017

Short communication: estimation of genetic parameters for residual feed intake and feeding behavior traits in dairy heifers

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Gene set enrichment analysis made simple

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Transcriptomic analysis by RNA sequencing reveals that hepatic interferon-induced genes may be associated with feed efficiency in beef heifers.

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22 September 2018

Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake

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22 September 2018

Use of residual feed intake in Holsteins during early lactation shows potential to improve feed efficiency through genetic selection

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Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake.

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22 September 2018

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22 September 2018

The carbon footprint of dairy production systems through partial life cycle assessment.

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22 September 2018

Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows.

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22 September 2018

Differential expression of genes in adipose tissue of first-lactation dairy cattle1

1 reference

https://pubmed.ncbi.nlm.nih.gov/28340555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic and statistical properties of residual feed intake

1 reference

https://pubmed.ncbi.nlm.nih.gov/28340555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physiological basis for residual feed intake

1 reference

https://pubmed.ncbi.nlm.nih.gov/28340555

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12864-017-3622-9

1 reference

Europe PubMed Central

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13 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28340555%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28340555%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

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