RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance (Q34274259)

1 August 2017

RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance (English)

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1 August 2017

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David Lynn

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Christopher J. Creevey

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Chris Creevey

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David A Kenny

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David Kenny

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author name string

Matthew McCabe

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1 August 2017

Sinéad Waters

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1 August 2017

Dermot Morris

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1 August 2017

language of work or name

English

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publication date

20 May 2012

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1 August 2017

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1 August 2017

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1 August 2017

193

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describes a project that uses

1 August 2017

DESeq2

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DEseq

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-193

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cites work

Genomics of metabolic adaptations in the peripartal cow.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Computational methods for transcriptome annotation and quantification using RNA-seq

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

From RNA-seq reads to differential expression results

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Gluconeogenesis in dairy cows: the secret of making sweet milk from sour dough.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

SNP discovery in the bovine milk transcriptome using RNA-Seq technology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Differential expression analysis for sequence count data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Negative energy balance and hepatic gene expression patterns in high-yielding dairy cows during the early postpartum period: a global approach.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Widespread transcription at neuronal activity-regulated enhancers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Gene ontology analysis for RNA-seq: accounting for selection bias

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Genetic variants of the FADS1 FADS2 gene cluster as related to essential fatty acid metabolism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Chimeric transcript discovery by paired-end transcriptome sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Negative energy balance alters global gene expression and immune responses in the uterus of postpartum dairy cows

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

The genome sequence of taurine cattle: a window to ruminant biology and evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Fasting-induced hepatic production of DHEA is regulated by PGC-1alpha, ERRalpha, and HNF4alpha

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Delta6-desaturase (FADS2) deficiency unveils the role of omega3- and omega6-polyunsaturated fatty acids

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

RNA-Seq: a revolutionary tool for transcriptomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Mapping and quantifying mammalian transcriptomes by RNA-Seq

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Influence of negative energy balance on cyclicity and fertility in the high producing dairy cow.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

ADSA Foundation Scholar Award. Biology of dairy cows during the transition period: the final frontier?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

A species comparison of liver slice synthesis and secretion of triacylglycerol from nonesterified fatty acids in media

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

Splanchnic Metabolism of Dairy Cows During the Transition From Late Gestation Through Early Lactation

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-193

Effects of propylene glycol or fat drench on plasma metabolites, liver composition, and production of dairy cows during the periparturient period

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-193

Interrelationships between negative energy balance (NEB) and IGF regulation in liver of lactating dairy cows.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-193

Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-193

Short communication: Hepatic gene expression for gluconeogenic enzymes in lactating dairy cows treated with bovine somatotropin

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-193

Tissue expression of angiopoietin-like protein 4 in cattle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-193

Dietary arachidonate differentially alters desaturase-elongase pathway flux and gene expression in liver and intestine of suckling pigs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-193

DNA methylation is not involved in preovulatory down-regulation of CYP11A1, HSD3B1, and CYP19A1 in bovine follicles but may have a role in permanent silencing of CYP19A1 in large granulosa lutein cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-193

The transcriptomic profiles of adipose tissues are modified by feed deprivation in lactating goats.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465249

28 October 2018

Identifiers

DOI

10.1186/1471-2164-13-193

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Dimensions Publication ID

1 August 2017

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1 August 2017

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