Transcriptome Profiling Identifies Multiplexin as a Target of SAGA Deubiquitinase Activity in Glia Required for Precise Axon Guidance During Drosophila Visual Development (Q36040816)

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English	Transcriptome Profiling Identifies Multiplexin as a Target of SAGA Deubiquitinase Activity in Glia Required for Precise Axon Guidance During Drosophila Visual Development	scientific article

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scholarly article

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Europe PubMed Central

11 August 2017

Transcriptome Profiling Identifies Multiplexin as a Target of SAGA Deubiquitinase Activity in Glia Required for Precise Axon Guidance During Drosophila Visual Development (English)

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Europe PubMed Central

11 August 2017

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7 June 2020

Pete E Pascuzzi

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Kaelan J Brennan

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Mitch R D'Aloia

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3 June 2016

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11 August 2017

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2435-2445

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7 June 2020

describes a project that uses

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Aggregation of Polyglutamine-expanded Ataxin 7 Protein Specifically Sequesters Ubiquitin-specific Protease 22 and Deteriorates Its Deubiquitinating Function in the Spt-Ada-Gcn5-Acetyltransferase (SAGA) Complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4978897

2 October 2017

Poly(Q) Expansions in ATXN7 Affect Solubility but Not Activity of the SAGA Deubiquitinating Module

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4978897

2 October 2017

iRNA-seq: computational method for genome-wide assessment of acute transcriptional regulation from total RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4978897

2 October 2017

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

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2 October 2017

The Drosophila surface glia transcriptome: evolutionary conserved blood-brain barrier processes

1 reference

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2 October 2017

The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4978897

2 October 2017

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4978897

2 October 2017

Trimmomatic: a flexible trimmer for Illumina sequence data

1 reference

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2 October 2017

Affinity-based isolation of tagged nuclei from Drosophila tissues for gene expression analysis

1 reference

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2 October 2017

Reelin is a target of polyglutamine expanded ataxin-7 in human spinocerebellar ataxia type 7 (SCA7) astrocytes

1 reference

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2 October 2017

Localized netrins act as positional cues to control layer-specific targeting of photoreceptor axons in Drosophila.

1 reference

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2 October 2017

bantam is required for optic lobe development and glial cell proliferation

1 reference

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2 October 2017

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2 October 2017

The tightly controlled deubiquitination activity of the human SAGA complex differentially modifies distinct gene regulatory elements

1 reference

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2 October 2017

Robo-3--mediated repulsive interactions guide R8 axons during Drosophila visual system development.

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2 October 2017

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2 October 2017

Structural Basis for Assembly and Activation of the Heterotetrameric SAGA Histone H2B Deubiquitinase Module

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2 October 2017

Structural Insights into the Assembly and Function of the SAGA Deubiquitinating Module

1 reference

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2 October 2017

dFezf/Earmuff maintains the restricted developmental potential of intermediate neural progenitors in Drosophila.

1 reference

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2 October 2017

The functional organisation of glia in the adult brain of Drosophila and other insects.

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2 October 2017

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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2 October 2017

Evolutionary conservation of vertebrate blood-brain barrier chemoprotective mechanisms in Drosophila

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2 October 2017

The putative cancer stem cell marker USP22 is a subunit of the human SAGA complex required for activated transcription and cell-cycle progression

1 reference

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2 October 2017

A TFTC/STAGA module mediates histone H2A and H2B deubiquitination, coactivates nuclear receptors, and counteracts heterochromatin silencing

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2 October 2017

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2 October 2017

The glycosyltransferase Fringe promotes Delta-Notch signaling between neurons and glia, and is required for subtype-specific glial gene expression

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2 October 2017

Endostatin signaling and regulation of endothelial cell-matrix interactions

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2 October 2017

Generation of biologically active endostatin fragments from human collagen XVIII by distinct matrix metalloproteases.

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Drosophila klarsicht has distinct subcellular localization domains for nuclear envelope and microtubule localization in the eye

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2 October 2017

Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8.

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2 October 2017

Unwrapping glial biology: Gcm target genes regulating glial development, diversification, and function

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2 October 2017

Making connections in the fly visual system

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2 October 2017

Two populations of neuronal intranuclear inclusions in SCA7 differ in size and promyelocytic leukaemia protein content

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2 October 2017

Association of ataxin-7 with the proteasome subunit S4 of the 19S regulatory complex

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2 October 2017

Similarities between spinocerebellar ataxia type 7 (SCA7) cell models and human brain: proteins recruited in inclusions and activation of caspase-3.

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2 October 2017

Glial cells mediate target layer selection of retinal axons in the developing visual system of Drosophila.

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2 October 2017

Collagen XVIII, containing an endogenous inhibitor of angiogenesis and tumor growth, plays a critical role in the maintenance of retinal structure and in neural tube closure (Knobloch syndrome)

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2 October 2017

loco encodes an RGS protein required for Drosophila glial differentiation

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2 October 2017

Cloning of the SCA7 gene reveals a highly unstable CAG repeat expansion

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2 October 2017

Drosophila photoreceptor axon guidance and targeting requires the dreadlocks SH2/SH3 adapter protein.

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2 October 2017

dachshund encodes a nuclear protein required for normal eye and leg development in Drosophila.

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2 October 2017

The homeobox gene repo is required for the differentiation and maintenance of glia function in the embryonic nervous system of Drosophila melanogaster

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2 October 2017

Monoclonal antibodies against the Drosophila nervous system

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2 October 2017

Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation

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27 July 2018

Spinster controls Dpp signaling during glial migration in the Drosophila eye.

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27 July 2018

SAGA-mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system

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27 July 2018

Decreased expression of Hsp27 and Hsp70 in transformed lymphoblastoid cells from patients with spinocerebellar ataxia type 7.

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27 July 2018

Hedgehog, transmitted along retinal axons, triggers neurogenesis in the developing visual centers of the Drosophila brain.

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27 July 2018

repo encodes a glial-specific homeo domain protein required in the Drosophila nervous system.

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27 July 2018

Mutations disrupting neuronal connectivity in the Drosophila visual system.

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27 July 2018

The Drosophila transcript encoded by the beta-amyloid protein precursor-like gene is restricted to the nervous system.

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27 July 2018

Characterization and spatial distribution of the ELAV protein duringDrosophila melanogaster development

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27 July 2018

Generation and early differentiation of glial cells in the first optic ganglion of Drosophila melanogaster

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27 July 2018

A transcriptional network controlling glial development in the Drosophila visual system.

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23 September 2018

Endostatin is a trans-synaptic signal for homeostatic synaptic plasticity

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23 September 2018

Sequential axon-derived signals couple target survival and layer specificity in the Drosophila visual system

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23 September 2018

X-gal staining of the central nervous system in adult Drosophila.

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23 September 2018

The POU-domain protein Pdm3 regulates axonal targeting of R neurons in the Drosophila ellipsoid body

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23 September 2018

SUMOylation attenuates the aggregation propensity and cellular toxicity of the polyglutamine expanded ataxin-7.

1 reference

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23 September 2018

Drosophila multiplexin (Dmp) modulates motor axon pathfinding accuracy

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23 September 2018

The effect of neuronal expression of heat shock proteins 26 and 27 on lifespan, neurodegeneration, and apoptosis in Drosophila.

1 reference

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23 September 2018

Drosophila Activin- and the Activin-like product Dawdle function redundantly to regulate proliferation in the larval brain

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23 September 2018

Development of neural lineages derived from the sine oculis positive eye field of Drosophila

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23 September 2018

Anterograde Jelly belly and Alk receptor tyrosine kinase signaling mediates retinal axon targeting in Drosophila.

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23 September 2018

The highly ordered assembly of retinal axons and their synaptic partners is regulated by Hedgehog/Single-minded in the Drosophila visual system

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23 September 2018

The KASH domain protein MSP-300 plays an essential role in nuclear anchoring during Drosophila oogenesis

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23 September 2018

glial cells missing and gcm2 cell autonomously regulate both glial and neuronal development in the visual system of Drosophila

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23 September 2018

moody encodes two GPCRs that regulate cocaine behaviors and blood-brain barrier permeability in Drosophila

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23 September 2018

Morphogenesis and proliferation of the larval brain glia in Drosophila

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23 September 2018

PML nuclear bodies and neuronal intranuclear inclusion in polyglutamine diseases

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23 September 2018

gcm2 promotes glial cell differentiation and is required with glial cells missing for macrophage development in Drosophila

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23 September 2018

Peripheral glia direct axon guidance across the CNS/PNS transition zone.

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23 September 2018

Spinocerebellar ataxia type 7 (SCA7): a neurodegenerative disorder with neuronal intranuclear inclusions.

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23 September 2018

Autosomal dominant cerebellar ataxia with pigmentary macular dystrophy. A clinical and genetic study of eight families.

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23 September 2018

Homozygosity mapping through whole genome analysis identifies a COL18A1 mutation in an Indian family presenting with an autosomal recessive neurological disorder

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1534/G3.116.031310

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Europe PubMed Central

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7 June 2020

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7 June 2020

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7 June 2020

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