iRNA-seq: computational method for genome-wide assessment of acute transcriptional regulation from total RNA-seq data (Q30883063)

4 November 2017

iRNA-seq: computational method for genome-wide assessment of acute transcriptional regulation from total RNA-seq data (English)

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4 November 2017

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6

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4 November 2017

Bjørk Ditlev Larsen

3

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Søren Fisker Schmidt

object named as

Søren Fisker Schmidt

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author name string

Jesper Grud Skat Madsen

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4 November 2017

Anne Loft

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4 November 2017

Ronni Nielsen

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4 November 2017

language of work or name

English

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publication date

6 January 2015

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4 November 2017

Nucleic Acids Research

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4 November 2017

43

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4 November 2017

6

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4 November 2017

e40

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Creative Commons Attribution-NonCommercial 4.0 International

4 November 2017

start time

10 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq.

14 July 2018

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Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response

14 July 2018

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STAR: ultrafast universal RNA-seq aligner

14 July 2018

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Defining the status of RNA polymerase at promoters

14 July 2018

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Genome-wide profiling of peroxisome proliferator-activated receptor γ in primary epididymal, inguinal, and brown adipocytes reveals depot-selective binding correlated with gene expression

14 July 2018

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Global analysis reveals multiple pathways for unique regulation of mRNA decay in induced pluripotent stem cells

14 July 2018

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Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain

14 July 2018

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Whole-genome chromatin profiling from limited numbers of cells using nano-ChIP-seq

14 July 2018

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Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes

14 July 2018

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Single-tube linear DNA amplification (LinDA) for robust ChIP-seq.

14 July 2018

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A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells

14 July 2018

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Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

14 July 2018

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Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites

14 July 2018

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ChREBP mediates glucose repression of peroxisome proliferator-activated receptor alpha expression in pancreatic beta-cells

14 July 2018

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

14 July 2018

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mRNA-Seq whole-transcriptome analysis of a single cell

14 July 2018

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14 July 2018

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RNA-Seq: a revolutionary tool for transcriptomics

14 July 2018

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Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis

14 July 2018

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Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

14 July 2018

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

14 July 2018

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

14 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

14 July 2018

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

14 July 2018

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The transcriptional landscape of the yeast genome defined by RNA sequencing

14 July 2018

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

14 July 2018

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14 July 2018

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Genome-wide profiling of transcription factor binding and epigenetic marks in adipocytes by ChIP-seq.

14 July 2018

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Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKU1365

Nanoscale chromatin profiling of gastric adenocarcinoma reveals cancer-associated cryptic promoters and somatically acquired regulatory elements.

21 January 2018

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25 November 2018

Identifiers

DOI

10.1093/NAR/GKU1365

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4 November 2017

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4 November 2017

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