Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq (Q59808051)

April 2022 Public Data File from Crossref

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1 reference

Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Complete chloroplast genome sequences of Lilium: insights into evolutionary dynamics and phylogenetic analyses

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Plastome phylogeny and early diversification of Brassicaceae

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast genomes: diversity, evolution, and applications in genetic engineering

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Complete chloroplast genome sequences of Praxelis (Eupatorium catarium Veldkamp), an important invasive species

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Strategies for complete plastid genome sequencing.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Comparative organization of chloroplast genomes

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast genomics: Expanding resources for an evolutionary conserved miniature molecule with enigmatic applications

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast genome resources and molecular markers differentiate rubber dandelion species from weedy relatives

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Rates and patterns of chloroplast DNA evolution

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Complete Chloroplast Genome of the Wollemi Pine (Wollemia nobilis): Structure and Evolution

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae).

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

1 reference

7 January 2021

Broad phylogenomic sampling and the sister lineage of land plants

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Phylotranscriptomic analysis of the origin and early diversification of land plants

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Data access for the 1,000 Plants (1KP) project

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Full transcription of the chloroplast genome in photosynthetic eukaryotes.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Polyploidy, hybridization and reticulate evolution: lessons from the Brassicaceae

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Phylogenetic perspectives on diversification and character evolution in the species-rich genusErysimum(Erysimeae; Brassicaceae) based on a densely sampled ITS approach

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

A comparison of leaf and petal senescence in wallflower reveals common and distinct patterns of gene expression and physiology

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Cutadapt removes adapter sequences from high-throughput sequencing reads

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Complete Structure of the Chloroplast Genome of Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

VISTA: computational tools for comparative genomics

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Genome-wide DNA polymorphism analyses using VariScan

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast redox signals: how photosynthesis controls its own genes

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Application of a simplified method of chloroplast enrichment to small amounts of tissue for chloroplast genome sequencing

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Angiosperm phylogeny based on matK sequence information

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

REPuter: the manifold applications of repeat analysis on a genomic scale

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast genome structures in Gentiana (Gentianaceae), based on three medicinal alpine plants used in Tibetan herbal medicine

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Comparative genomics of four Liliales families inferred from the complete chloroplast genome sequence of Veratrum patulum O. Loes. (Melanthiaceae).

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Protein Complexes Implicated in RNA Editing in Plant Organelles

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

The rice nuclear genome continuously integrates, shuffles, and eliminates the chloroplast genome to cause chloroplast-nuclear DNA flux

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

NUPTs in sequenced eukaryotes and their genomic organization in relation to NUMTs

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Chloroplast DNA-based studies in molecular ecology may be compromised by nuclear-encoded plastid sequence.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: size, relative age and chromosomal localization

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

Patterns of genomic integration of nuclear chloroplast DNA fragments in plant species

1 reference

https://api.crossref.org/works/10.1038%2FS41598-018-35654-3

7 January 2021

NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30479362

12 December 2020

inferred from PubMed ID database lookup

Resolving Rapid Radiations Within Angiosperm Families Using Anchored Phylogenomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30479362

12 December 2020