Computational Methods for Quality Check, Preprocessing and Normalization of RNA-Seq Data for Systems Biology and Analysis (Q57881342)

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Summarizing and correcting the GC content bias in high-throughput sequencing

21 January 2018

1 reference

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

21 January 2018

1 reference

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 January 2018

1 reference

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The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources

21 January 2018

1 reference

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

21 January 2018

1 reference

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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

21 January 2018

1 reference

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STAR: ultrafast universal RNA-seq aligner

21 January 2018

1 reference

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Systematic evaluation of spliced alignment programs for RNA-seq data

21 January 2018

1 reference

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Statistical methods for identifying differentially expressed genes in RNA-Seq experiments

21 January 2018

1 reference

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Computational methods for transcriptome annotation and quantification using RNA-seq

21 January 2018

1 reference

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Qualimap: evaluating next-generation sequencing alignment data.

21 January 2018

1 reference

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

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Removing technical variability in RNA-seq data using conditional quantile normalization

21 January 2018

1 reference

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baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

21 January 2018

1 reference

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TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

21 January 2018

1 reference

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A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data

21 January 2018

1 reference

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WGCNA: an R package for weighted correlation network analysis

21 January 2018

1 reference

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SAMStat: monitoring biases in next generation sequencing data

21 January 2018

1 reference

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Model-based variance-stabilizing transformation for Illumina microarray data.

21 January 2018

1 reference

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Systems Genetics of Complex Diseases Using RNA-Sequencing Methods

21 January 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

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Transcriptome analysis using next-generation sequencing

21 January 2018

1 reference

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Transcript length bias in RNA-seq data confounds systems biology

21 January 2018

1 reference

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From RNA-seq reads to differential expression results

21 January 2018

1 reference

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GC-content normalization for RNA-Seq data

21 January 2018

1 reference

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limma powers differential expression analyses for RNA-sequencing and microarray studies

21 January 2018

1 reference

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A scaling normalization method for differential expression analysis of RNA-seq data

21 January 2018

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 January 2018

1 reference

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Comparison of software packages for detecting differential expression in RNA-seq studies

21 January 2018

1 reference

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A comparison of methods for differential expression analysis of RNA-seq data

21 January 2018

1 reference

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Differential analysis of gene regulation at transcript resolution with RNA-seq

21 January 2018

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

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RSeQC: quality control of RNA-seq experiments

21 January 2018

1 reference

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RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis

21 January 2018

1 reference

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Trimming of sequence reads alters RNA-Seq gene expression estimates

21 January 2018

1 reference

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Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells

21 January 2018

1 reference

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Bias detection and correction in RNA-Sequencing data

21 January 2018

1 reference

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A comparative study of techniques for differential expression analysis on RNA-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-43332-5_3