Evaluation of commercially available small RNASeq library preparation kits using low input RNA. (Q55418749)

http://europepmc.org/abstract/PMC/5936030

8 July 2018

title

Evaluation of commercially available small RNASeq library preparation kits using low input RNA. (English)

1 reference

http://europepmc.org/abstract/PMC/5936030

8 July 2018

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Elizabeth D Hutchins

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Olivia Ziegler

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Ashish Yeri

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Amanda Courtright

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Eric Alsop

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Elizabeth Carlson

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Michael Hsieh

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Avash Das

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Ravi V Shah

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Joel Rozowsky

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Saumya Das

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Kendall Van Keuren-Jensen

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

language of work or name

English

0 references

publication date

5 May 2018

1 reference

http://europepmc.org/abstract/PMC/5936030

8 July 2018

published in

BMC Genomics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

page(s)

331

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

12 June 2020

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s12864-018-4726-6

0 references

cites work

Summarizing performance for genome scale measurement of miRNA: reference samples and metrics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Total Extracellular Small RNA Profiles from Plasma, Saliva, and Urine of Healthy Subjects

9 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Toward the promise of microRNAs - Enhancing reproducibility and rigor in microRNA research.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

An Expression Signature as an Aid to the Histologic Classification of Non-Small Cell Lung Cancer

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Diverse human extracellular RNAs are widely detected in human plasma.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Empirical insights into the stochasticity of small RNA sequencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Translating RNA sequencing into clinical diagnostics: opportunities and challenges.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Cell and Microvesicle Urine microRNA Deep Sequencing Profiles from Healthy Individuals: Observations with Potential Impact on Biomarker Studies

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

5' tRNA Halves: The Next Generation of Immune Signaling Molecules

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Deep Sequencing of Serum Small RNAs Identifies Patterns of 5' tRNA Half and YRNA Fragment Expression Associated with Breast Cancer

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

piRBase: a web resource assisting piRNA functional study.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

The validity of circulating microRNAs in oncology: five years of challenges and contradictions.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Clinical relevance of circulating cell-free microRNAs in cancer

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Characterization of human plasma-derived exosomal RNAs by deep sequencing.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Identification of extracellular miRNA in human cerebrospinal fluid by next-generation sequencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Dampening enthusiasm for circulating microRNA in breast cancer

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

STAR: ultrafast universal RNA-seq aligner

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

miRBase: integrating microRNA annotation and deep-sequencing data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

9 July 2018

1 reference

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Small non-coding RNA profiling in human biofluids and surrogate tissues from healthy individuals: description of the diverse and most represented species.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Systematic comparison of small RNA library preparation protocols for next-generation sequencing.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Using FirePlex™ Particle Technology for Multiplex MicroRNA Profiling Without RNA Purification.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

5'-YRNA fragments derived by processing of transcripts from specific YRNA genes and pseudogenes are abundant in human serum and plasma

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Assessing sample and miRNA profile quality in serum and plasma or other biofluids

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5936030

Quantification of circulating miRNAs in plasma: effect of preanalytical and analytical parameters on their isolation and stability

12 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29728066

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-018-4726-6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

12 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29728066%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference