Brachypodium distachyon Long Noncoding RNAs: Genome-Wide Identification and Expression Analysis (Q42778184)

7 November 2017

Brachypodium distachyon Long Noncoding RNAs: Genome-Wide Identification and Expression Analysis (English)

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7 November 2017

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Brachypodium distachyon

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Edoardo Bertolini

4

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author name string

Concetta De Quattro

series ordinal

1

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7 November 2017

Erica Mica

series ordinal

2

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7 November 2017

Mario Enrico Pè

series ordinal

3

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7 November 2017

language of work or name

English

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publication date

1 January 2018

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Methods in Molecular Biology

7 November 2017

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7 November 2017

1667

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7 November 2017

31-42

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Catalyzing plant science research with RNA-seq

7 November 2017

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Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.

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Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

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Target mimicry provides a new mechanism for regulation of microRNA activity

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Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

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Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice

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Genome-wide discovery and characterization of maize long non-coding RNAs.

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RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

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Cutadapt removes adapter sequences from high-throughput sequencing reads

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An extensive evaluation of read trimming effects on Illumina NGS data analysis

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Methods for distinguishing between protein-coding and long noncoding RNAs and the elusive biological purpose of translation of long noncoding RNAs

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CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

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PatMaN: rapid alignment of short sequences to large databases

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HTSeq--a Python framework to work with high-throughput sequencing data

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The Sequence Read Archive: explosive growth of sequencing data.

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Genome sequencing and analysis of the model grass Brachypodium distachyon

21 January 2018

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Pfam: the protein families database

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Rfam 12.0: updates to the RNA families database

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Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA

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10.1007/978-1-4939-7278-4_3

21 January 2018

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DOI

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7 November 2017

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