Deep analysis of wild Vitis flower transcriptome reveals unexplored genome regions associated with sex specification (Q42774778)

7 November 2017

Deep analysis of wild Vitis flower transcriptome reveals unexplored genome regions associated with sex specification (English)

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7 November 2017

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9

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Patrícia Gomes de Almeida

7 November 2017

Patrícia Gomes de Almeida

6

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João Lucas Coito

João Lucas Coito

2

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Miguel Ramos

Miguel Jesus Nunes Ramos

1

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Jorge Cunha

Jorge Cunha

4

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Margarida Rocheta

Margarida Rocheta

Maria Manuela Ribeiro Costa

10

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Maria Manuela Ribeiro Costa

7

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author name string

Joana Fino

3

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7 November 2017

Helena Silva

5

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7 November 2017

Sara Amâncio

8

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7 November 2017

24 October 2016

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7 November 2017

20

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inferred from page(s)

published in

Plant Molecular Biology

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7 November 2017

93

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7 November 2017

1-2

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7 November 2017

151-170

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https://scigraph.springernature.com/pub.10.1007/s11103-016-0553-9

7 November 2017

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cites work

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Linkage mapping and molecular diversity at the flower sex locus in wild and cultivated grapevine reveal a prominent SSR haplotype in hermaphrodite plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Gibberellins promote flowering of arabidopsis by activating the LEAFY promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

A small intergenic region drives exclusive tissue-specific expression of the adjacent genes in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Jasmonate: preventing the maize tassel from getting in touch with his feminine side

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Comparison of assembly algorithms for improving rate of metatranscriptomic functional annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

New genes as drivers of phenotypic evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Gibberellin regulates Arabidopsis floral development via suppression of DELLA protein function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

A gene controlling sex in grapevines placed on a molecular marker-based genetic map

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Plant development goes like clockwork.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

The sex determination process in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Genome-wide analysis of MIKCC-type MADS box genes in grapevine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Candidate genes within a 143 kb region of the flower sex locus in Vitis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Hormonal interactions and gene regulation can link monoecy and environmental plasticity to the evolution of dioecy in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

RUPTURED POLLEN GRAIN1, a member of the MtN3/saliva gene family, is crucial for exine pattern formation and cell integrity of microspores in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Brassinosteroid control of sex determination in maize.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Extensive oscillatory gene expression during C. elegans larval development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Understanding systems-level properties: timely stories from the study of clocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

The control of developmental phase transitions in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Heterozygous Mapping Strategy (HetMappS) for High Resolution Genotyping-By-Sequencing Markers: A Case Study in Grapevine

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Arabidopsis RNA-binding protein FCA regulates microRNA172 processing in thermosensory flowering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Dark Matter RNA: Existence, Function, and Controversy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

The female-specific Cs-ACS1G gene of cucumber. A case of gene duplication and recombination between the non-sex-specific 1-aminocyclopropane-1-carboxylate synthase gene and a branched-chain amino acid transaminase gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

mRNA metabolism of flowering-time regulators in wild-type Arabidopsis revealed by a nuclear cap binding protein mutant, abh1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Interactions of the developmental regulator ABI3 with proteins identified from developing Arabidopsis seeds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

WUSCHEL is a primary target for transcriptional regulation by SPLAYED in dynamic control of stem cell fate in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Genetics of sex determination in flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Regulation and function of SOC1, a flowering pathway integrator

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Evaluation of de novo transcriptome assemblies from RNA-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Genetic linkage map of the interspecific grape rootstock cross Ramsey (Vitis champinii) x Riparia Gloire (Vitis riparia).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Involvement of ethylene in sex expression and female flower development in watermelon (Citrullus lanatus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Central and peripheral circadian clocks in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Inception of maleness: auxin contribution to flower masculinization in the dioecious cactus Opuntia stenopetala.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

From RNA-seq reads to differential expression results

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

A knock-out mutation in allene oxide synthase results in male sterility and defective wound signal transduction in Arabidopsis due to a block in jasmonic acid biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

A small XY chromosomal region explains sex determination in wild dioecious V. vinifera and the reversal to hermaphroditism in domesticated grapevines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Transcribed dark matter: meaning or myth?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Flower development and sex specification in wild grapevine

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Patterns of gene expression during Arabidopsis flower development from the time of initiation to maturation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Evolutionary dynamics of retrotransposons assessed by high-throughput sequencing in wild relatives of wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

SPLAYED, a novel SWI/SNF ATPase homolog, controls reproductive development in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Specification of floral organs in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Floral homeotic genes are targets of gibberellin signaling in flower development

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

MADS-box transcription factor AGL21 regulates lateral root development and responds to multiple external and physiological signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Using the Velvet de novo assembler for short-read sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Cloning and expression analysis of GmGAL1, SOC1 homolog gene in soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11103-016-0553-9

Genetic dissection of sex determinism, inflorescence morphology and downy mildew resistance in grapevine

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27778293

12 December 2020

inferred from PubMed ID database lookup

Ethylene biosynthesis and signaling networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27778293

12 December 2020

inferred from PubMed ID database lookup

Sex Conversion in a Male Vitis vinifera L. by a Kinin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27778293

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S11103-016-0553-9

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Dimensions Publication ID

7 November 2017

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