Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics. (Q42036390)

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22 February 2020

title

Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics (English)

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22 February 2020

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22 February 2020

Shyamasree Saha

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22 February 2020

Gary L A Barker

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22 February 2020

Fawaz Ghali

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22 February 2020

Andrew Jones

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22 February 2020

David A. Matthews

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22 February 2020

Conrad Bessant

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22 February 2020

author name string

Kate J Heesom

4

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publication date

12 August 2015

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Molecular & Cellular Proteomics

22 February 2020

published in

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volume

14

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22 February 2020

issue

11

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22 February 2020

page(s)

3087-3093

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MS-GF+ makes progress towards a universal database search tool for proteomics

22 February 2020

cites work

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5 June 2018

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5 June 2018

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A draft map of the human proteome

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Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML

5 June 2018

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Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities

5 June 2018

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De novo derivation of proteomes from transcriptomes for transcript and protein identification

5 June 2018

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A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis

5 June 2018

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The mzIdentML data standard for mass spectrometry-based proteomics results

5 June 2018

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

5 June 2018

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Andromeda: a peptide search engine integrated into the MaxQuant environment

5 June 2018

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

5 June 2018

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mzML--a community standard for mass spectrometry data

5 June 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

5 June 2018

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TopHat: discovering splice junctions with RNA-Seq

5 June 2018

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RNA-Seq: a revolutionary tool for transcriptomics

5 June 2018

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ProteoWizard: open source software for rapid proteomics tools development

5 June 2018

1 reference

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

5 June 2018

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SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.

5 June 2018

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Computational approaches to peptide identification via tandem MS.

17 August 2018

1 reference

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17 August 2018

Identifiers

DOI

10.1074/MCP.O115.048777

1 reference

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22 February 2020

1 reference

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22 February 2020

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