Condition-dependent co-regulation of genomic clusters of virulence factors in the grapevine trunk pathogen Neofusicoccum parvum (Q40546996)

21 September 2017

Condition-dependent co-regulation of genomic clusters of virulence factors in the grapevine trunk pathogen Neofusicoccum parvum (English)

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21 September 2017

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Neofusicoccum parvum

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1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6637977&resulttype=core&format=json

15 May 2020

Dario Cantu

6

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15 May 2020

author name string

Abraham Morales-Cruz

2

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15 May 2020

Rosa Figueroa-Balderas

3

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15 May 2020

Daniel P Lawrence

4

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15 May 2020

Kendra Baumgartner

5

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15 May 2020

publication date

8 September 2016

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Molecular Plant Pathology

21 September 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6637977&resulttype=core&format=json

15 May 2020

volume

19

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15 May 2020

issue

1

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15 May 2020

page(s)

21-34

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describes a project that uses

15 May 2020

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

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21 January 2018

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21 January 2018

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Regulation of fungal secondary metabolism

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Functional genomic profiling of Aspergillus fumigatus biofilm reveals enhanced production of the mycotoxin gliotoxin

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21 January 2018

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21 January 2018

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21 January 2018

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Efflux in fungi: la pièce de résistance

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Genes expressed in grapevine leaves reveal latent wood infection by the fungal pathogen Neofusicoccum parvum

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A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

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Systems analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction

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Genomic and transcriptomic differences in community acquired methicillin resistant Staphylococcus aureus USA300 and USA400 strains.

21 January 2018

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Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi.

21 January 2018

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Fast gapped-read alignment with Bowtie 2

21 January 2018

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Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum

21 January 2018

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Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

21 January 2018

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Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

21 January 2018

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 January 2018

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Incorporating motif analysis into gene co-expression networks reveals novel modular expression pattern and new signaling pathways

21 January 2018

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Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood

21 January 2018

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An improved map of conserved regulatory sites for Saccharomyces cerevisiae

21 January 2018

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The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44.

21 January 2018

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

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Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes

21 January 2018

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Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens

21 January 2018

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Assemblytics: a web analytics tool for the detection of variants from an assembly.

21 January 2018

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Assessing the gene space in draft genomes

21 January 2018

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21 January 2018

The telomerase database

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Degradation of the plant defence hormone salicylic acid by the biotrophic fungus Ustilago maydis

21 January 2018

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Heterochromatin influences the secondary metabolite profile in the plant pathogen Fusarium graminearum

21 January 2018

1 reference

Pathogenesis of Eutypa lata in grapevine: identification of virulence factors and biochemical characterization of cordon dieback

21 January 2018

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

21 January 2018

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Exploring genome characteristics and sequence quality without a reference

21 January 2018

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Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact

21 January 2018

1 reference

Gene prediction with a hidden Markov model and a new intron submodel

21 January 2018

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Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.).

21 January 2018

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Trihydroxynaphthalene reductase from Magnaporthe grisea: realization of an active center inhibitor and elucidation of the kinetic mechanism

21 January 2018

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TopHat: discovering splice junctions with RNA-Seq

21 January 2018

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Fatty acid esters produced by Lasiodiplodia theobromae function as growth regulators in tobacco seedlings

21 January 2018

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Analysis of the Aspergillus fumigatus proteome reveals metabolic changes and the activation of the pseurotin A biosynthesis gene cluster in response to hypoxia

21 January 2018

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Aspergillus enzymes involved in degradation of plant cell wall polysaccharides

21 January 2018

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Functional Characterization of the Biosynthesis of Radicicol, an Hsp90 Inhibitor Resorcylic Acid Lactone from Chaetomium chiversii

21 January 2018

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Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium

21 January 2018

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antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

21 January 2018

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Biosynthesis and engineering of isoprenoid small molecules

21 January 2018

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Transcriptional regulatory elements in fungal secondary metabolism

21 January 2018

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SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

21 January 2018

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SDR and MDR: completed genome sequences show these protein families to be large, of old origin, and of complex nature

21 January 2018

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Discovery and characterization of terpenoid biosynthetic pathways of fungi

21 January 2018

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Multiple epoxide hydrolases in Alternaria alternata f. sp. lycopersici and their relationship to medium composition and host-specific toxin production

21 January 2018

1 reference

12 December 2020

Two cellobiohydrolase-encoding genes from Aspergillus niger require D-xylose and the xylanolytic transcriptional activator XlnR for their expression

1 reference

12 December 2020

TM4: a free, open-source system for microarray data management and analysis

1 reference

12 December 2020

FUM13 Encodes a Short Chain Dehydrogenase/Reductase Required for C-3 Carbonyl Reduction during Fumonisin Biosynthesis in Gibberella moniliformis

1 reference

12 December 2020

Production of Fenton's reagent by cellobiose oxidase from cellulolytic cultures of Phanerochaete chrysosporium

1 reference

12 December 2020

Sophorose as an inducer of cellulase in Trichoderma viride

1 reference

12 December 2020

Induction of Cellulase by Gentiobiose and Its Sulfur-Containing Analog in Penicillium purpurogenum

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12 December 2020

Cytochrome P450 enzymes in the fungal kingdom

1 reference

12 December 2020

Draft Genome Sequence of Neofusicoccum parvum Isolate UCR-NP2, a Fungal Vascular Pathogen Associated with Grapevine Cankers

1 reference

12 December 2020

Adaptive genomic structural variation in the grape powdery mildew pathogen, Erysiphe necator

1 reference

12 December 2020

Developmental and Metabolic Plasticity of White-Skinned Grape Berries in Response to Botrytis cinerea during Noble Rot.

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12 December 2020

Susceptibility of Cultivated and Wild Vitis spp. to Wood Infection by Fungal Trunk Pathogens

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12 December 2020

Pathogenicity of Botryosphaeriaceae Species Isolated from Grapevine Cankers in California

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12 December 2020

Identification and Distribution of Botryosphaeria spp. Associated with Grapevine Cankers in California

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12 December 2020

Carbon repression in Aspergilli

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12 December 2020

Identifiers

DOI

10.1111/MPP.12491

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6637977&resulttype=core&format=json

15 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6637977&resulttype=core&format=json

15 May 2020

1 reference