antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification (Q40231155)

18 September 2017

antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification (English)

1 reference

18 September 2017

Satria A Kautsar

6

0 references

Marc G Chevrette

Marc G Chevrette

3

0 references

Kai Blin

Kai Blin

1

0 references

Marnix H Medema

Marnix H Medema

18

0 references

Ekaterina Shelest

Ekaterina Shelest

13

0 references

Tilmann Weber

Tilmann Weber

17

0 references

Rainer Breitling

Rainer Breitling

14

0 references

Jeroen S. Dickschat

11

Jeroen S Dickschat

1 reference

18 September 2017

15

Eriko Takano

1 reference

18 September 2017

Thomas Wolf

2

1 reference

18 September 2017

Xiaowen Lu

4

1 reference

18 September 2017

Christopher J Schwalen

5

1 reference

18 September 2017

Hernando G Suarez Duran

7

1 reference

18 September 2017

Emmanuel L C de Los Santos

8

1 reference

18 September 2017

Hyun Uk Kim

9

1 reference

18 September 2017

Mariana Nave

10

1 reference

18 September 2017

Douglas A Mitchell

12

1 reference

18 September 2017

Sang Yup Lee

16

1 reference

18 September 2017

language of work or name

1 reference

28 April 2017

1 reference

18 September 2017

Nucleic Acids Research

1 reference

Creative Commons Attribution 4.0 International

18 September 2017

start time

28 April 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

A new genome-mining tool redefines the lasso peptide biosynthetic landscape.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

The evolution of genome mining in microbes - a review.

22 September 2017

1 reference

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The Pfam protein families database: towards a more sustainable future

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Bacterial terpene cyclases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Computational approaches to natural product discovery

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Minimum Information about a Biosynthetic Gene cluster.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

The Gene bldA, a regulator of morphological differentiation and antibiotic production in streptomyces

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Fast and sensitive protein alignment using DIAMOND

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

In silico tools for the analysis of antibiotic biosynthetic pathways

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Classification of the adenylation and acyl-transferase activity of NRPS and PKS systems using ensembles of substrate specific hidden Markov models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Automated genome mining for natural products.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

TTA codons in some genes prevent their expression in a class of developmental, antibiotic-negative, Streptomyces mutants

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

The use of a rare codon specifically during development?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

NRPSsp: non-ribosomal peptide synthase substrate predictor

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5570095

CRISPy-web: An online resource to design sgRNAs for CRISPR applications.

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28460038

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28460038

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKX319

1 reference

journals/nar/BlinWCLSKDSKNDM17

18 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

18 September 2017

1 reference