RNA-seq reveals more consistent reference genes for gene expression studies in human non-melanoma skin cancers (Q38602807)

4 September 2017

RNA-seq reveals more consistent reference genes for gene expression studies in human non-melanoma skin cancers (English)

1 reference

4 September 2017

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1 reference

2

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11 June 2020

Lynlee L Lin

6

1 reference

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11 June 2020

Duncan Lambie

9

1 reference

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11 June 2020

Ian Frazer

10

1 reference

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11 June 2020

Marcel E. Dinger

11

1 reference

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11 June 2020

Tarl W. Prow

13

1 reference

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11 June 2020

8

Anthony P Raphael

1 reference

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11 June 2020

12

H Peter Soyer

1 reference

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11 June 2020

4

Jean-Marie Tan

1 reference

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11 June 2020

7

Sudipta Sinnya

1 reference

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11 June 2020

author name string

Van L T Hoang

1

1 reference

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11 June 2020

Xiu-Cheng Quek

3

1 reference

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11 June 2020

Elizabeth J Payne

5

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11 June 2020

publication date

21 August 2017

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4 September 2017

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11 June 2020

volume

5

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11 June 2020

page(s)

e3631

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Creative Commons Attribution 4.0 International

11 June 2020

copyright license

start time

21 August 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

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DNA damage stress induces the expression of ribosomal protein S27a gene in a p53-dependent manner

6 September 2017

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HTSeq--a Python framework to work with high-throughput sequencing data

6 September 2017

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MAP kinase pathway alterations in BRAF-mutant melanoma patients with acquired resistance to combined RAF/MEK inhibition

6 September 2017

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Human housekeeping genes, revisited

6 September 2017

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

6 September 2017

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Molecular profiling of cutaneous squamous cell carcinomas and actinic keratoses from organ transplant recipients.

6 September 2017

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GENCODE: the reference human genome annotation for The ENCODE Project

6 September 2017

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Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

6 September 2017

1 reference

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Transcriptional profiling of psoriasis using RNA-seq reveals previously unidentified differentially expressed genes.

6 September 2017

1 reference

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A sequence-based approach to identify reference genes for gene expression analysis

6 September 2017

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Microarray analysis of cutaneous squamous cell carcinomas reveals enhanced expression of epidermal differentiation complex genes

6 September 2017

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A scaling normalization method for differential expression analysis of RNA-seq data

6 September 2017

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Integrative analysis of the melanoma transcriptome

6 September 2017

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

6 September 2017

1 reference

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The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments

6 September 2017

1 reference

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Selection and validation of candidate housekeeping genes for studies of human keratinocytes--review and recommendations

6 September 2017

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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

6 September 2017

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Evidence based selection of housekeeping genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5572537

Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5572537

Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper – Excel-based tool using pair-wise correlations

6 September 2017

1 reference

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Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

6 September 2017

1 reference

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Normalization of gene expression measurements in tumor tissues: comparison of 13 endogenous control genes.

6 September 2017

1 reference

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Housekeeping genes as internal standards in cancer research

14 September 2017

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Bioinformatics approach for choosing the correct reference genes when studying gene expression in human keratinocytes

14 September 2017

1 reference

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27 September 2017

Identifiers

DOI

10.7717/PEERJ.3631

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28852586%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28852586%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference