Transcriptome characteristics of filamentous fungi deduced using high-throughput analytical technologies. (Q38248415)

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16 February 2020

review article

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title

Transcriptome characteristics of filamentous fungi deduced using high-throughput analytical technologies (English)

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16 February 2020

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3

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16 February 2020

author name string

Martha Lucía Meijueiro

series ordinal

1

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16 February 2020

Francisco Santoyo

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2

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16 February 2020

Antonio G Pisabarro

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4

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16 February 2020

publication date

11 September 2014

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Briefings in functional genomics

16 February 2020

published in

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16 February 2020

volume

13

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16 February 2020

issue

6

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16 February 2020

page(s)

440-450

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Characterization of the yeast transcriptome

16 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Studying bacterial transcriptomes using RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

21 January 2018

Fungal transcriptomics

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Exploring plant transcriptomes using ultra high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

A comparison of analog and Next-Generation transcriptomic tools for mammalian studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Serial analysis of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Microarray expression profiling: capturing a genome-wide portrait of the transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptome analysis using next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

21 January 2018

The new world of RNAs

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

The expanding transcriptome: the genome as the 'Book of Sand'

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Eukaryotic snoRNAs: a paradigm for gene expression flexibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Decrypting the genome's alternative messages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Temperature-regulated transcription in the pathogenic fungus Cryptococcus neoformans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Use of a cDNA microarray to analyse gene expression patterns in human cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Microarrays, deep sequencing and the true measure of the transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Applications of new sequencing technologies for transcriptome analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Functional diversity of RNAi-associated sRNAs in fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Natural antisense transcripts and long non-coding RNA in Neurospora crassa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

De novo assembly of Auricularia polytricha transcriptome using Illumina sequencing for gene discovery and SSR marker identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Single cell transcriptomics of neighboring hyphae of Aspergillus niger

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Reconstruction of signaling networks regulating fungal morphogenesis by transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Gene discovery and annotation using LCM-454 transcriptome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Applications of next-generation sequencing technologies in functional genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Current state-of-art of sequencing technologies for plant genomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Next-generation sequencing technologies for gene expression profiling in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

How to map billions of short reads onto genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Bias detection and correction in RNA-Sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Non-coding RNAs in Saccharomyces cerevisiae: what is the function?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptomics of the rice blast fungus Magnaporthe oryzae in response to the bacterial antagonist Lysobacter enzymogenes reveals candidate fungal defense response genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genome and transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. cubense causing banana vascular wilt disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genome sequence of the model mushroom Schizophyllum commune

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

RNA maps reveal new RNA classes and a possible function for pervasive transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Alternative splicing in ascomycetes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Fungal alternative splicing is associated with multicellular complexity and virulence: a genome-wide multi-species study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genetical genomics analysis of a yeast segregant population for transcription network inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Structured association analysis leads to insight into Saccharomyces cerevisiae gene regulation by finding multiple contributing eQTL hotspots associated with functional gene modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

The host-infecting fungal transcriptome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Untangling the transcriptome from fungus-infected plant tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Comparative transcriptomics of infectious spores from the fungal pathogen Histoplasma capsulatum reveals a core set of transcripts that specify infectious and pathogenic states

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genomic and transcriptomic insights into lifestyle transitions of a hemi-biotrophic fungal pathogen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Comparative analysis of secretomes in basidiomycete fungi.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

SOLiD-SAGE of endophyte-infected red fescue reveals numerous effects on host transcriptome and an abundance of highly expressed fungal secreted proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Amanita thiersii is a saprotrophic fungus expanding its range in the United States

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

PacC and pH-dependent transcriptome of the mycotrophic fungus Trichoderma virens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptomic responses to cadmium in the ectomycorrhizal fungus Paxillus involutus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptome profiling of the response of Mycosphaerella graminicola isolates to an azole fungicide using cDNA microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptome analysis of Paracoccidioides brasiliensis cells undergoing mycelium-to-yeast transition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Paralysis of nematodes: shifts in the transcriptome of the nematode-trapping fungus Monacrosporium haptotylum during infection of Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen

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1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses

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1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Transcriptome analysis in response to heat shock and cadmium in the aquatic fungus Blastocladiella emersonii.

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1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent

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1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Gene expression analysis of Phanerochaete chrysosporium during the transition time from primary growth to secondary metabolism.

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1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Long serial analysis of gene expression for transcriptome profiling during the initiation of ligninolytic enzymes production in Phanerochaete chrysosporium

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1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oak.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

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1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

Role for antisense RNA in regulating circadian clock function in Neurospora crassa

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1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELU033

21 January 2018

Identifiers

DOI

10.1093/BFGP/ELU033

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25212483%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

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