Blood lipids influence DNA methylation in circulating cells (Q37040432)

17 August 2017

Blood lipids influence DNA methylation in circulating cells (English)

1 reference

17 August 2017

0 references

0 references

0 references

Cornelia M. van Duijn

27

Cornelia M van Duijn

0 references

André Uitterlinden

19

André G Uitterlinden

0 references

Gonneke Willemsen

20

Gonneke Willemsen

0 references

Cisca Wijmenga

30

Cisca Wijmenga

0 references

Daria V. Zhernakova

Daria V Zhernakova

8

0 references

Marc Jan Bonder

Marc Jan Bonder

5

0 references

Lude Franke

Lude Franke

22

0 references

Koen F Dekkers

Koen F Dekkers

1

0 references

Roderick C Slieker

Roderick C Slieker

3

0 references

Jenny van Dongen

Jenny van Dongen

11

0 references

Rick Jansen

Rick Jansen

24

0 references

Dorret Boomsma

26

Dorret I Boomsma

1 reference

17 August 2017

23

Peter A C 't Hoen

1 reference

17 August 2017

33

P Eline Slagboom

1 reference

17 August 2017

13

Albert Hofman

1 reference

17 August 2017

Leonard H van den Berg

9

Leonard H van den Berg

1 reference

17 August 2017

29

Jan H Veldink

1 reference

17 August 2017

Coenraad Dirk Adriaan Stehouwer

17

Coen D A Stehouwer

1 reference

17 August 2017

16

Casper G Schalkwijk

1 reference

17 August 2017

14

Jouke J Hottenga

1 reference

17 August 2017

35

Bastiaan T Heijmans

1 reference

17 August 2017

34

J Wouter Jukema

1 reference

17 August 2017

25

Joyce van Meurs

1 reference

17 August 2017

32

Erik W van Zwet

1 reference

17 August 2017

2

Maarten van Iterson

1 reference

17 August 2017

31

BIOS Consortium

1 reference

17 August 2017

4

Matthijs H Moed

1 reference

17 August 2017

6

Michiel van Galen

1 reference

17 August 2017

7

Hailiang Mei

1 reference

17 August 2017

10

Joris Deelen

1 reference

17 August 2017

12

Diana van Heemst

1 reference

17 August 2017

Carla J H van der Kallen

15

Carla J H van der Kallen

1 reference

17 August 2017

18

Ettje F Tigchelaar

1 reference

17 August 2017

21

Alexandra Zhernakova

1 reference

Marleen M J van Greevenbroek

17 August 2017

28

Marleen M J van Greevenbroek

1 reference

17 August 2017

27 June 2016

1 reference

17 August 2017

1 reference

17 August 2017

17

1 reference

17 August 2017

1

1 reference

17 August 2017

138

1 reference

describes a project that uses

17 August 2017

limma

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4922056

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

minfi

minfi

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s13059-016-1000-6

0 references

cites work

The multifaceted interplay between lipids and epigenetics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Lipid changes due to fenofibrate treatment are not associated with changes in DNA methylation patterns in the GOLDN study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Epigenome-wide association of DNA methylation markers in peripheral blood from Indian Asians and Europeans with incident type 2 diabetes: a nested case-control study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Mendelian randomization with invalid instruments: effect estimation and bias detection through Egger regression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Early gestation as the critical time-window for changes in the prenatal environment to affect the adult human blood methylome.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Integrative analysis of 111 reference human epigenomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

limma powers differential expression analyses for RNA-sequencing and microarray studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Functional normalization of 450k methylation array data improves replication in large cancer studies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

DNA methylation of lipid-related genes affects blood lipid levels

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

DNA methylation signatures link prenatal famine exposure to growth and metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Advances in epigenome-wide association studies for common diseases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Mendelian randomization: genetic anchors for causal inference in epidemiological studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Whole-genome sequence variation, population structure and demographic history of the Dutch population

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Methylation at CPT1A locus is associated with lipoprotein subfraction profiles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Calculating statistical power in Mendelian randomization studies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Discovery and refinement of loci associated with lipid levels

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Desmosterol and DHCR24: unexpected new directions for a terminal step in cholesterol synthesis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

From promises to practical strategies in epigenetic epidemiology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Tobacco smoking leads to extensive genome-wide changes in DNA methylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

The Adult Netherlands Twin Register: twenty-five years of survey and biological data collection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

STAR: ultrafast universal RNA-seq aligner

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

DNA methylation arrays as surrogate measures of cell mixture distribution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Removing technical variability in RNA-seq data using conditional quantile normalization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

The immune system in atherosclerosis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Cholesterol feedback: from Schoenheimer's bottle to Scap's MELADL

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Regulation of sterol synthesis in eukaryotes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Genomic control for association studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

The mitochondrial carnitine palmitoyltransferase system. From concept to molecular analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Evaluation of methods for the measurement of low-density lipoprotein cholesterol.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Multivariable Mendelian randomization: the use of pleiotropic genetic variants to estimate causal effects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Robust validation of methylation levels association at CPT1A locus with lipid plasma levels

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Estimation of the concentration of low-density lipoprotein cholesterol in plasma, without use of the preparative ultracentrifuge.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

MethylAid: visual and interactive quality control of large Illumina 450k datasets.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

The Rotterdam Study: 2014 objectives and design update

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Use of allele scores as instrumental variables for Mendelian randomization

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Population based epidemiology of amyotrophic lateral sclerosis using capture-recapture methodology.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

Evidence of genetic enrichment for exceptional survival using a family approach: the Leiden Longevity Study.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4922056

The cross-sectional association between insulin resistance and circulating complement C3 is partly explained by plasma alanine aminotransferase, independent of central obesity and general inflammation (the CODAM study)

4 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1000-6

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1000-6

Applied Econometrics with R

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1000-6

Conducting Meta-Analyses in R with the metafor Package

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13059-016-1000-6

The not-so-simple HDL story: Is it time to revise the HDL cholesterol hypothesis?

21 January 2018

1 reference

12 December 2020

Hypercholesterolemia-induced priming of hematopoietic stem and progenitor cells aggravates atherosclerosis

1 reference

12 December 2020

Oxidized low-density lipoprotein induces long-term proinflammatory cytokine production and foam cell formation via epigenetic reprogramming of monocytes

1 reference

12 December 2020

Disease variants alter transcription factor levels and methylation of their binding sites

1 reference

12 December 2020

10.1186/S13059-016-1000-6

Identifiers

DOI

1 reference

Dimensions Publication ID

17 August 2017

0 references

1 reference

17 August 2017

1 reference