Transcriptomic and epigenomic characterization of the developing bat wing (Q36844779)

16 August 2017

Transcriptomic and epigenomic characterization of the developing bat wing (English)

1 reference

16 August 2017

0 references

0 references

17

Nicola Illing

0 references

Zoe Gill

object named as

Zoe Gill

4

0 references

Nadav Ahituv

object named as

Nadav Ahituv

18

0 references

Katherine Pollard

14

object named as

Katherine S Pollard

1 reference

16 August 2017

Walter L Eckalbar

1

1 reference

16 August 2017

Stephen A Schlebusch

2

1 reference

16 August 2017

Mandy K Mason

3

1 reference

16 August 2017

Ash V Parker

5

1 reference

16 August 2017

Betty M Booker

6

1 reference

16 August 2017

Sierra Nishizaki

7

1 reference

16 August 2017

Christiane Muswamba-Nday

8

1 reference

16 August 2017

Elizabeth Terhune

9

1 reference

16 August 2017

Kimberly A Nevonen

10

1 reference

16 August 2017

Nadja Makki

11

1 reference

16 August 2017

Tara Friedrich

12

1 reference

16 August 2017

Julia E VanderMeer

13

1 reference

16 August 2017

Lucia Carbone

15

1 reference

16 August 2017

Jeff D Wall

16

1 reference

16 August 2017

Nicola Illing

17

1 reference

16 August 2017

language of work or name

English

0 references

publication date

28 March 2016

1 reference

16 August 2017

1 reference

16 August 2017

48

1 reference

16 August 2017

5

1 reference

16 August 2017

528-536

1 reference

Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

16 August 2017

start time

28 March 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ng.3537

0 references

cites work

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

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Retinoic acid-independent expression of Meis2 during autopod patterning in the developing bat and mouse limb

29 September 2017

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A pathway to bone: signaling molecules and transcription factors involved in chondrocyte development and maturation

29 September 2017

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

29 September 2017

1 reference

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Wnt5a and Wnt11 inhibit the canonical Wnt pathway and promote cardiac progenitor development via the Caspase-dependent degradation of AKT.

29 September 2017

1 reference

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RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation

29 September 2017

1 reference

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lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs

29 September 2017

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HTSeq--a Python framework to work with high-throughput sequencing data

29 September 2017

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To BMP or not to BMP during vertebrate limb bud development.

29 September 2017

1 reference

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Trimmomatic: a flexible trimmer for Illumina sequence data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

The evolution and development of mammalian flight

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Planar cell polarity in vertebrate limb morphogenesis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

29 September 2017

1 reference

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

29 September 2017

1 reference

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FastUniq: a fast de novo duplicates removal tool for paired short reads

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Comparative analysis of bat genomes provides insight into the evolution of flight and immunity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

GENCODE: the reference human genome annotation for The ENCODE Project

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

BEDOPS: high-performance genomic feature operations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Fast gapped-read alignment with Bowtie 2

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

29 September 2017

Diamond Blackfan anemia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

A high-resolution map of human evolutionary constraint using 29 mammals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

A strand-specific library preparation protocol for RNA sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

FLASH: fast length adjustment of short reads to improve genome assemblies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Full-length transcriptome assembly from RNA-Seq data without a reference genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

PHAST and RPHAST: phylogenetic analysis with space/time models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

A unique chromatin signature uncovers early developmental enhancers in humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Histone H3K27ac separates active from poised enhancers and predicts developmental state

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Digital gene expression tag profiling of bat digits provides robust candidates contributing to wing formation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

GREAT improves functional interpretation of cis-regulatory regions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Identification of a primary target of thalidomide teratogenicity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

BEDTools: a flexible suite of utilities for comparing genomic features

29 September 2017

1 reference

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Detection of nonneutral substitution rates on mammalian phylogenies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

The Sequence Alignment/Map format and SAMtools

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Fast and accurate short read alignment with Burrows-Wheeler transform

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Msx genes are important apoptosis effectors downstream of the Shh/Gli3 pathway in the limb

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

A second wave of Sonic hedgehog expression during the development of the bat limb

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Regulatory divergence modifies limb length between mammals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

High-resolution profiling of histone methylations in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Interdigital webbing retention in bat wings illustrates genetic changes underlying amniote limb diversification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Development of bat flight: morphologic and molecular evolution of bat wing digits

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Evolution at two levels: on genes and form

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Automated generation of heuristics for biological sequence comparison

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

AUGUSTUS: a web server for gene finding in eukaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Aligning multiple genomic sequences with the threaded blockset aligner

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

The LIM-homeobox gene Lhx8 is required for the development of many cholinergic neurons in the mouse forebrain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Tbx5 is required for forelimb bud formation and continued outgrowth

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Tbx5 is essential for forelimb bud initiation following patterning of the limb field in the mouse embryo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Mouse Af9 is a controller of embryo patterning, like Mll, whose human homologue fuses with Af9 after chromosomal translocation in leukemia

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

The BMP antagonist Gremlin regulates outgrowth, chondrogenesis and programmed cell death in the developing limb

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Mechanisms of GDF-5 action during skeletal development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

The roles of FGFs in the early development of vertebrate limbs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

The significance of digital gene expression profiles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Divide, accumulate, differentiate: cell condensation in skeletal development revisited

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Basic local alignment search tool

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

The mouse short ear skeletal morphogenesis locus is associated with defects in a bone morphogenetic member of the TGF beta superfamily

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

mTORC2 signaling promotes skeletal growth and bone formation in mice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Lrrn1 is required for formation of the midbrain-hindbrain boundary and organiser through regulation of affinity differences between midbrain and hindbrain cells in chick.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Unique expression patterns of multiple key genes associated with the evolution of mammalian flight.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Fgf signaling components are associated with muscles and tendons during limb development.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Expression pattern of LRR and Ig domain-containing protein (LRRIG protein) in the early mouse embryo

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

Biomechanics of the bat limb skeleton: scaling, material properties and mechanics.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848140

FGF-2 induces regeneration of the chick limb bud

5 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27019111

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The role of early development in mammalian limb diversification: a descriptive comparison of early limb development between the Natal long-fingered bat (Miniopterus natalensis) and the mouse (Mus musculus)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27019111

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evaluation of Maternal Features as Indicators of Asynchronous Embryonic Development inMiniopterus natalensis

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.3537

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NG.3537

1 reference

16 August 2017

1 reference

16 August 2017

1 reference