Features of 80S mammalian ribosome and its subunits (Q36824046)

16 August 2017

Features of 80S mammalian ribosome and its subunits (English)

1 reference

16 August 2017

Anna V El'skaya

2

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author name string

Tatyana V Budkevich

series ordinal

1

1 reference

PMCID

2504317

16 August 2017

Knud H Nierhaus

series ordinal

3

1 reference

PMCID

2504317

16 August 2017

language of work or name

English

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publication date

16 July 2008

1 reference

16 August 2017

Nucleic Acids Research

1 reference

16 August 2017

36

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16 August 2017

14

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16 August 2017

4736-4744

1 reference

Molecular contacts between antibiotics and the 30S ribosomal particle

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Ribosomal tethering and clustering as mechanisms for translation initiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

The highly conserved LepA is a ribosomal elongation factor that back-translocates the ribosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

The E-site story: the importance of maintaining two tRNAs on the ribosome during protein synthesis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Structure of eEF3 and the mechanism of transfer RNA release from the E-site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Deacylated tRNA is released from the E site upon A site occupation but before GTP is hydrolyzed by EF-Tu.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Evolution of translational initiation: new insights from the archaea

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Functions of eukaryotic factors in initiation of translation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Codon-anticodon interaction at the P site is a prerequisite for tRNA interaction with the small ribosomal subunit

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Location of template on the human ribosome as revealed from data on cross-linking with reactive mRNA analogs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Three tRNA binding sites on Escherichia coli ribosomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Mechanism of codon-anticodon interaction in ribosomes. Direct functional evidence that isolated 30S subunits contain two codon-specific binding sites for transfer RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

A multiple mutant of Escherichia coli lacking the exoribonucleases RNase II, RNase D, and RNase BN

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

The allosteric three-site model for the ribosomal elongation cycle. Analysis with a heteropolymeric mRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Significance of the third tRNA binding site, the E site, on E. coli ribosomes for the accuracy of translation: an occupied E site prevents the binding of non-cognate aminoacyl-tRNA to the A site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Reactions at the termini of tRNA with T4 RNA ligase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

How do eucaryotic ribosomes select initiation regions in messenger RNA?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

The use of nuclease P1in sequence analysis of end group labeled RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

The inhibition of incorporation of leucine into protein of cell-free systems from rat liver and Escherichia coli by chlortetracycline

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Self-coded 3'-extension of run-off transcripts produces aberrant products during in vitro transcription with T7 RNA polymerase

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Polyuridylic acid binding and translating by Escherichia coli ribosomes: Stimulation by Protein 1, inhibition by aurintricarboxylic acid

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Interaction of siomycin with the acceptor site of Escherichia coli ribosomes.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Tetracycline can inhibit tRNA binding to the ribosomal P site as well as to the A site

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

tRNA binding sites on the subunits of Escherichia coli ribosomes.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

The allosteric three-site model for the ribosomal elongation cycle. New insights into the inhibition mechanisms of aminoglycosides, thiostrepton, and viomycin.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

58 Preparation of protein synthesis elongation factors from rabbit reticulocytes

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

New features of the ribosome and ribosomal inhibitors: non-enzymatic recycling, misreading and back-translocation

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Arrangement of mRNA 3' of the A site codon on the human 80S ribosome.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Efficient and faithful in vitro translation of natural and synthetic mRNA with human ribosomes.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

Transfer RNA binding to 80S ribosomes from yeast: evidence for three sites.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504317

The Inhibition Pattern of Antibiotics on the Extent and Accuracy of tRNA Binding to the Ribosome, and Their Effect on the Subsequent Steps in Chain Elongation

5 September 2018

1 reference

12 December 2020

Allosteric interactions between the ribosomal transfer RNA-binding sites A and E

1 reference

12 December 2020

The elongation factor 3 unique in higher fungi and essential for protein biosynthesis is an E site factor

1 reference

12 December 2020

Three tRNA Binding Sites in Rabbit Liver Ribosomes and Role of the Intrinsic ATPase in 80S Ribosomes from Higher Eukaryotes†

1 reference

12 December 2020

A fast and effective method for purification of elongation factor 1 alpha from rabbit liver

1 reference

12 December 2020

Studying functional significance of the sequence 980-1061 in the central domain of human 18S rRNA using complementary DNA probes

1 reference

12 December 2020

Polypeptide release factors in prokaryotes and eukaryotes: same function, different structure

1 reference

12 December 2020

On the specificity of the two ribosomal binding sites: Studies with tetracycline

1 reference

12 December 2020

Parameters for the preparation of Escherichia coli ribosomes and ribosomal subunits active in tRNA binding

1 reference

12 December 2020

Apparent association constants of tRNAs for the ribosomal A, P, and E sites

1 reference

12 December 2020

The binding of purified Phe-tRNA and peptidyl-tRNA Phe to Escherichia coli ribosomes

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKN424

1 reference

16 August 2017

1 reference

16 August 2017

1 reference

PMCID

2504317