Quantifying circular RNA expression from RNA-seq data using model-based framework (Q36320432)

13 August 2017

Quantifying circular RNA expression from RNA-seq data using model-based framework (English)

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13 August 2017

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7

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8 January 2019

6

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author name string

Musheng Li

1

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13 August 2017

Xueying Xie

2

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13 August 2017

Jing Zhou

3

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13 August 2017

Mengying Sheng

4

1 reference

13 August 2017

Xiaofeng Yin

5

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13 August 2017

Wanjun Gu

8

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13 August 2017

language of work or name

English

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publication date

8 March 2017

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13 August 2017

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circRNA biogenesis competes with pre-mRNA splicing.

13 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Correlation of circular RNA abundance with proliferation--exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

NCBI GEO: archive for functional genomics data sets--update

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Near-optimal probabilistic RNA-seq quantification

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Specific identification and quantification of circular RNAs from sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Polyester: simulating RNA-seq datasets with differential transcript expression

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Identifying differentially expressed transcripts from RNA-seq data with biological variation

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

circBase: a database for circular RNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Expanded identification and characterization of mammalian circular RNAs

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Natural RNA circles function as efficient microRNA sponges

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Comparison of circular RNA prediction tools.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Detecting and characterizing circular RNAs

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Circular RNAs are abundant, conserved, and associated with ALU repeats

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Circular RNA ITCH has inhibitory effect on ESCC by suppressing the Wnt/β-catenin pathway

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Exon-intron circular RNAs regulate transcription in the nucleus.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

CircNet: a database of circular RNAs derived from transcriptome sequencing data

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Circular RNAs are a large class of animal RNAs with regulatory potency

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Circular RNA: A new star of noncoding RNAs

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Streaming fragment assignment for real-time analysis of sequencing experiments

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Circular RNA profile in gliomas revealed by identification tool UROBORUS

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Exon circularization requires canonical splice signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Differential expression in RNA-seq: a matter of depth

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

A benchmark for RNA-seq quantification pipelines

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Circular RNA is expressed across the eukaryotic tree of life

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Widespread noncoding circular RNAs in plants

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

Complementary sequence-mediated exon circularization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTX129

10.1093/BIOINFORMATICS/BTX129

21 January 2018

Identifiers

DOI

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journals/bioinformatics/LiXZSYKZG17

13 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference